Rat-oriented gene map
Presented here is a genome-wide comparative map aligned in the
order determined by our rat RH mapping effort..
Comparative information of rat, mouse, and human genes are
available through the useful links.
==Rat=
*gene id* Gene id's show the official gene symbols approved
by the rat gene nomenclature committee.
*Alias* The internal processing codes for our experiments.
*RHdb* The official RHDB id's are shown linking to original RHDB
entries. If not deposited into RHDB, the data are linked to the
original RH scores in our in-house RHDB (no RH.## numbers; they
will be deposited into the official RHDB soon). They also display
original chromosomal assignment on the right.
*EMBL* EMBL's accession numbers of the corresponding genes.
*Unigene* Unigene id's, if found in rat Unigene database.
*RH fwk-marker* It shows all RH fwk-markers in order. They
are also accompanied by the centi ray positions in our map.
Original RHDB data are linked to each cells.
*Chr(RNO)* "RNO"'s are assigned if any rat genes are
RH-mapped.
==Mouse==
*Gene id's* Official gene symbols are assigned, if they are found
to be likely counterparts of the mapped rat genes.
*Chr(MMU)* MMU's are assigned if corresponding mouse genes are
already mapped. Color representations highlight the conserved
syntenic segments, likely to be most appropriate on our present
data.
*MGI(Chr) and MGI(cM)* Precise map locations of mouse
counterparts retrieved from
MGI databases
. The original MGI's data are
cross-referenced through the cells.
*Unigene* Unigene's id's if the genes are found in mouse Unigene
database.
==Human==
*gene id* Gene id's show
the official gene symbols (in bold) and other aliases.
*chromosome* It shows the
chromosome numbers in color representation.Syntenic conservations
are highlighted by continuously-colored cells.
Please note that estimated syntenic
conservation is most likely, at least on present data.
*human map* Human gene
locations are basically obtained from
OMIM database
. When
no OMIM data are available, or OMIM data has possible errornous
locations, other databases are employed.
"ug" denotes
Unigene database
and "bac" denotes
a high-throughput
genome sequecnce database (HTGS)
. (s) denotes the
location based on synteny.
These data are verified by manual
inspections.
*omim map* This data show
show the chromsomal locations accommodated in OMIM database
containing small portion of discrepancy to other databases (i.e.
different from Unigene
databse and also inconsistent with syntenic conservations).
Original OMIM data can be retrieved.
*Unigene* This data shows the chromosomal locations accommodated
in Unigene database, also linked to the original Unigene data.