Human-oriented
gene map
Presented here is
a genome-wide comparative map
aligned, basically, in the order of MGI's
linkage map of the Jackson Laboratory. Please note that these
maps are constructed based on
the NCBI's human/mouse homology
relationships by Debry;
we also employed the MGI's linkage data, if no data are available
in the Debry's map. Comparative information of rat, mouse,
and human genes are available
through the useful links.
==Rat=
*gene id* Gene id's show the official gene symbols approved
by the rat gene nomenclature committee.
*Alias* The internal processing codes for our experiments.
*RHdb* The official RHDB id's are shown linking to original RHDB
entries. If not deposited into RHDB, the data are linked to the
original RH scores in our in-house RHDB (no RH.## numbers; they
will be deposited into the official RHDB soon). They also display
original chromosomal assignment on the right.
*EMBL* EMBL's accession numbers of the corresponding genes.
*Unigene* Unigene id's, if found in rat Unigene database.
*RH fwk-marker* The most closely-linked fwk markers are
shown, for each rat genes. They also accompanied by the original
centi-Ray positions in our RH map.
*Chr(RNO)* "RNO"'s are assigned if any rat genes are
RH-mapped. The continuous color represemtations show the most
likely contiguous segments (i.e., syntenically conserved
segments), at least based on our original RH data.
==Mouse==
*Gene id's* Official gene symbols of
mouse genes.
*Chr(MMU)* Chromosome assignments of mouse genes. Color
representaions shows the contiguous syntenic segments, mainly
adapted from the
original Debry's map
.
*MGI(Chr) and MGI(cM)* Precise map locations of mouse genes
retrieved from
MGI databases
and
Debry's map
. The original MGI's data are
cross-referenced through the items.
*Unigene* Unigene's id's if the genes are found in mouse Unigene
database.
==Human==
*gene id* Gene id's show the official
gene symbols (in bold) and other aliases.
*chromosome* It shows the chromosome numbers
in color representation. Syntenic
conservations are highlighted by continuous
ly-colored cells
, based on the
NCBI's Debry map
.
*human map* Human gene locations are basically obtained from OMIM
database. When no OMIM data are available, or OMIM data has
possible errornous locations, other databases are employed. "ug"
denotes Unigene
databse and "bac" denotes a high-throughput
genome sequecnce database (HTGS).
(s) denotes the location based on synteny. These data are
verified by manual inspections.
*omim map* This data show show the chromsomal locations
accommodated in OMIM database containing small portion of
discrepancy to other databases (i.e. different from Unigene
databse and also inconsistent with syntenic conservations).
Original OMIM data can be retrieved.
*Unigene* This data shows the chromosomal locations accommodated
in Unigene database, also linked to the
original Unigene data.