BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 964g07 (348 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D14Rat55 264 1e-71 D17Rat138 36 0.005 D1Rat470 30 0.28 D14Rat134 30 0.28 D1Rat52 30 0.28 >D14Rat55 Length = 327 Score = 264 bits (133), Expect = 1e-71 Identities = 139/141 (98%), Positives = 139/141 (98%) Query: 109 ttttatacatgtgggtggacatgcaagttcatatatatgtgcatgttagtaagcccaagg 168 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 ttttatacatgcgggtggacatgcaagttcatatatatgtgcatgttagtaagcccaagg 246 Query: 169 ttgaaatttgtgagtctccctatatcactctaccatatttactatggcctggtctctaac 228 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 247 ttgaaatttgtgagtctccctatatcactctaccttatttactatggcctggtctctaac 306 Query: 229 ctgaatcaagggttgcctgat 249 ||||||||||||||||||||| Sbjct: 307 ctgaatcaagggttgcctgat 327 Score = 131 bits (66), Expect = 1e-31 Identities = 69/70 (98%), Positives = 69/70 (98%) Query: 4 gatcacatttgctgtgagttcatacaatgttatgtccatagacatctatctctttttaaa 63 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 84 gatcacatttgctgtgagttcatataatgttatgtccatagacatctatctctttttaaa 143 Query: 64 gttttctcct 73 |||||||||| Sbjct: 144 gttttctcct 153 >D17Rat138 Length = 486 Score = 36.2 bits (18), Expect = 0.005 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 137 tcatatatatgtgcatgt 154 |||||||||||||||||| Sbjct: 110 tcatatatatgtgcatgt 127 >D1Rat470 Length = 823 Score = 30.2 bits (15), Expect = 0.28 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 12 ttgctgtgagttcat 26 ||||||||||||||| Sbjct: 231 ttgctgtgagttcat 245 >D14Rat134 Length = 779 Score = 30.2 bits (15), Expect = 0.28 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 17 gtgagttcatacaat 31 ||||||||||||||| Sbjct: 85 gtgagttcatacaat 99 >D1Rat52 Length = 570 Score = 30.2 bits (15), Expect = 0.28 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 138 catatatatgtgcat 152 ||||||||||||||| Sbjct: 246 catatatatgtgcat 232 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 213 Number of Sequences: 1828 Number of extensions: 213 Number of successful extensions: 72 Number of sequences better than 10: 30 length of query: 348 length of database: 1091843 effective HSP length: 14 effective length of query: 334 effective length of database: 1066251 effective search space: 356127834 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)