BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 962b05 (380 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D12Rat66 90 4e-19 D2Rat240 52 8e-08 D10Rat103 44 2e-05 D14Rat49 36 0.005 D10Rat222 30 0.31 >D12Rat66 Length = 612 Score = 89.7 bits (45), Expect = 4e-19 Identities = 131/156 (83%), Positives = 131/156 (83%), Gaps = 9/156 (5%) Query: 221 ctgtgaagagacaccatgaccaaggcaattcttaggaaggacaacatttatttggagctg 280 ||||||| |||||||||||||||||||| ||||| |||||||||||||| |||| ||| Sbjct: 181 ctgtgaacagacaccatgaccaaggcaactcttat-aaggacaacatttaattgggactg 239 Query: 281 gcttacagttttggaggtttagccttttatcatcatggcgggaggcgtggcagcacccag 340 |||||||| || |||||| || | ||||||| || ||||| | |||||||| |||| Sbjct: 240 gcttacaggttcagaggttcagtcc---atcatcaaggtgggag-catggcagcatccag 295 Query: 341 gcaggcaaacatggtgctggaggagctgagagttct 376 ||||||| ||||||||||||||||||||||||| Sbjct: 296 gcaggca----tggtgctggaggagctgagagttct 327 >D2Rat240 Length = 699 Score = 52.0 bits (26), Expect = 8e-08 Identities = 32/34 (94%), Positives = 32/34 (94%) Query: 221 ctgtgaagagacaccatgaccaaggcaattctta 254 ||||||||||||||||| ||||||||||||||| Sbjct: 337 ctgtgaagagacaccatatccaaggcaattctta 370 >D10Rat103 Length = 565 Score = 44.1 bits (22), Expect = 2e-05 Identities = 32/34 (94%), Positives = 32/34 (94%), Gaps = 1/34 (2%) Query: 221 ctgtgaagagacaccatgaccaaggcaattctta 254 |||||||||||||| | ||||||||||||||||| Sbjct: 201 ctgtgaagagacacaa-gaccaaggcaattctta 233 >D14Rat49 Length = 580 Score = 36.2 bits (18), Expect = 0.005 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 221 ctgtgaagagacaccatgacca 242 ||||||| |||||||||||||| Sbjct: 166 ctgtgaaaagacaccatgacca 145 >D10Rat222 Length = 559 Score = 30.2 bits (15), Expect = 0.31 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 156 cagagaccctgggaa 170 ||||||||||||||| Sbjct: 211 cagagaccctgggaa 197 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 183 Number of Sequences: 1828 Number of extensions: 183 Number of successful extensions: 60 Number of sequences better than 10: 21 length of query: 380 length of database: 1091843 effective HSP length: 14 effective length of query: 366 effective length of database: 1066251 effective search space: 390247866 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)