BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 914a07 (283 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D2Rat3 84 2e-17 D4Rat19 26 3.6 D3Rat114 26 3.6 >D2Rat3 Length = 408 Score = 83.8 bits (42), Expect = 2e-17 Identities = 54/58 (93%), Positives = 54/58 (93%) Query: 94 atacttcagttaacaagaacagttagccagaagcagaactacagaagccaaaaagcag 151 |||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 302 atacttcagtaaacgagaacagttagccagaagcaaaactacagaatccaaaaagcag 359 Score = 32.2 bits (16), Expect = 0.058 Identities = 28/32 (87%), Positives = 28/32 (87%) Query: 14 tagccctgagcctttctcagggtcatctttta 45 |||||| |||| ||||||||||| | |||||| Sbjct: 243 tagcccagagcttttctcagggtgagctttta 274 >D4Rat19 Length = 559 Score = 26.3 bits (13), Expect = 3.6 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 22 agcctttctcagg 34 ||||||||||||| Sbjct: 61 agcctttctcagg 73 >D3Rat114 Length = 503 Score = 26.3 bits (13), Expect = 3.6 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 90 cactatacttcag 102 ||||||||||||| Sbjct: 245 cactatacttcag 257 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 83 Number of Sequences: 1828 Number of extensions: 83 Number of successful extensions: 29 Number of sequences better than 10: 5 length of query: 283 length of database: 1091843 effective HSP length: 14 effective length of query: 269 effective length of database: 1066251 effective search space: 286821519 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)