BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 849b04 (344 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D18Rat115 202 3e-53 D2Rat169 30 0.28 D13Rat50 30 0.28 D19Rat25 30 0.28 >D18Rat115 Length = 700 Score = 202 bits (102), Expect = 3e-53 Identities = 102/102 (100%), Positives = 102/102 (100%) Query: 71 tttggttcagtgaggccatgcctcaaggcagtgagtcatagagaaagacacctagtgtcc 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 tttggttcagtgaggccatgcctcaaggcagtgagtcatagagaaagacacctagtgtcc 200 Query: 131 tgcccataggaactcacaagccacacgtttataggcatgcaa 172 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 tgcccataggaactcacaagccacacgtttataggcatgcaa 158 Score = 168 bits (85), Expect = 5e-43 Identities = 85/85 (100%), Positives = 85/85 (100%) Query: 213 taattaatcttacaccggatagcctataagcctaatagactcaggtaatgcagggcatac 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117 taattaatcttacaccggatagcctataagcctaatagactcaggtaatgcagggcatac 58 Query: 273 aaagaagagaactgaagacccggag 297 ||||||||||||||||||||||||| Sbjct: 57 aaagaagagaactgaagacccggag 33 >D2Rat169 Length = 565 Score = 30.2 bits (15), Expect = 0.28 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 318 ctgacctggcatggc 332 ||||||||||||||| Sbjct: 153 ctgacctggcatggc 139 >D13Rat50 Length = 536 Score = 30.2 bits (15), Expect = 0.28 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 318 ctgacctggcatggc 332 ||||||||||||||| Sbjct: 137 ctgacctggcatggc 123 >D19Rat25 Length = 328 Score = 30.2 bits (15), Expect = 0.28 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 318 ctgacctggcatggc 332 ||||||||||||||| Sbjct: 182 ctgacctggcatggc 168 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 139 Number of Sequences: 1828 Number of extensions: 139 Number of successful extensions: 43 Number of sequences better than 10: 15 length of query: 344 length of database: 1091843 effective HSP length: 14 effective length of query: 330 effective length of database: 1066251 effective search space: 351862830 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)