BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 787h04 (384 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D9Rat91 100 4e-22 D7Rat113 62 9e-11 D18Rat73 30 0.31 >D9Rat91 Length = 557 Score = 99.6 bits (50), Expect = 4e-22 Identities = 59/62 (95%), Positives = 59/62 (95%) Query: 1 gatcttagagcataagccattggtgttttgttcaggaaattttttccagtgcccatgtgt 60 ||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct: 190 gatcttagaacataagccattggtgttctgttcaggaaattttctccagtgcccatgtgt 131 Query: 61 tt 62 || Sbjct: 130 tt 129 >D7Rat113 Length = 490 Score = 61.9 bits (31), Expect = 9e-11 Identities = 40/43 (93%), Positives = 40/43 (93%) Query: 1 gatcttagagcataagccattggtgttttgttcaggaaatttt 43 ||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 146 gatcttagagcataaaccattggtgttgtcttcaggaaatttt 104 >D18Rat73 Length = 425 Score = 30.2 bits (15), Expect = 0.31 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 221 acacaaacacacata 235 ||||||||||||||| Sbjct: 264 acacaaacacacata 278 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 353 Number of Sequences: 1828 Number of extensions: 353 Number of successful extensions: 159 Number of sequences better than 10: 100 length of query: 384 length of database: 1091843 effective HSP length: 14 effective length of query: 370 effective length of database: 1066251 effective search space: 394512870 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)