BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 717c10 (170 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D5Rat251 94 1e-20 >D5Rat251 Length = 911 Score = 93.7 bits (47), Expect = 1e-20 Identities = 47/47 (100%), Positives = 47/47 (100%) Query: 1 gatcaggtatacaatagtatcacatgtgtttttgatgagtataagcg 47 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 gatcaggtatacaatagtatcacatgtgtttttgatgagtataagcg 426 Score = 46.1 bits (23), Expect = 2e-06 Identities = 26/27 (96%), Positives = 26/27 (96%) Query: 88 catatgtagcaagtacctaaataatgt 114 |||||||||||| |||||||||||||| Sbjct: 467 catatgtagcaaatacctaaataatgt 493 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 36 Number of Sequences: 1828 Number of extensions: 36 Number of successful extensions: 14 Number of sequences better than 10: 2 length of query: 170 length of database: 1091843 effective HSP length: 14 effective length of query: 156 effective length of database: 1066251 effective search space: 166335156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 12 (24.3 bits)