BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 712h11 (350 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D13Rat140 119 4e-28 D2Rat61 42 7e-05 D3Rat7 40 3e-04 D10Rat122 32 0.072 D9Rat13 30 0.28 >D13Rat140 Length = 590 Score = 119 bits (60), Expect = 4e-28 Identities = 68/71 (95%), Positives = 68/71 (95%) Query: 170 tttcaaggcttngaactttacccttaagaggactaattctcaaaaggctttcctacaaca 229 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 197 tttcaaggctttgaactttacccttaagaggactaattctcaaaaggcattcctacaaca 256 Query: 230 cagtcctgtag 240 ||| ||||||| Sbjct: 257 cagccctgtag 267 Score = 113 bits (57), Expect = 2e-26 Identities = 73/76 (96%), Positives = 73/76 (96%), Gaps = 3/76 (3%) Query: 1 gatctggaaac-ttagggtgtgcctgtgagtacgtgtgcacatga--gtgtgtgtgcaca 57 ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 69 gatctggaaaccttagggtgtgcctgtgagtacgtgtgcacatgagtgtgtgtgtgcaca 128 Query: 58 agtgcttgtgtggctc 73 |||||||||||||||| Sbjct: 129 agtgcttgtgtggctc 144 >D2Rat61 Length = 712 Score = 42.1 bits (21), Expect = 7e-05 Identities = 21/21 (100%), Positives = 21/21 (100%) Query: 322 gacactcacctttaatcccag 342 ||||||||||||||||||||| Sbjct: 95 gacactcacctttaatcccag 75 >D3Rat7 Length = 652 Score = 40.1 bits (20), Expect = 3e-04 Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 330 cctttaatcccagaactcag 349 |||||||||||||||||||| Sbjct: 166 cctttaatcccagaactcag 147 >D10Rat122 Length = 598 Score = 32.2 bits (16), Expect = 0.072 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 328 cacctttaatcccagaactc 347 ||||||||||||||| |||| Sbjct: 307 cacctttaatcccagcactc 326 >D9Rat13 Length = 847 Score = 30.2 bits (15), Expect = 0.28 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 39 acatgagtgtgtgtg 53 ||||||||||||||| Sbjct: 261 acatgagtgtgtgtg 275 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 520 Number of Sequences: 1828 Number of extensions: 520 Number of successful extensions: 206 Number of sequences better than 10: 45 length of query: 350 length of database: 1091843 effective HSP length: 14 effective length of query: 336 effective length of database: 1066251 effective search space: 358260336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)