BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 704b02 (361 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DXRat58 101 1e-22 D4Rat139 28 1.2 >DXRat58 Length = 412 Score = 101 bits (51), Expect = 1e-22 Identities = 88/94 (93%), Positives = 88/94 (93%), Gaps = 5/94 (5%) Query: 243 cgcttgtttccctgttt-cctatgtgggtcccagttttactgagtg-ttcaggaagaagt 300 ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 227 cgcttgtttccctgttttcctatgtgggtcccagttttac-gagtgtttcaggaagaagt 285 Query: 301 tgtggcctcatctctgaccttgagtgtgtcagag 334 ||||||||||| | ||| |||||||||||||||| Sbjct: 286 tgtggcctcat-tntga-cttgagtgtgtcagag 317 Score = 67.9 bits (34), Expect = 1e-12 Identities = 93/104 (89%), Positives = 93/104 (89%), Gaps = 9/104 (8%) Query: 103 agtcaagatttctct-gtgta-ttgcaagagttggtggatggagg-ccatagccttgat- 158 ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 69 agtcaagatttctctagtgtaattgcaagagttggtggatggaggaccatagccttgaat 128 Query: 159 -attg-cccagag-cacaaataaaat--ctggaaggaacctgtg 197 |||| ||||||| ||||||||||| |||||||||||||||| Sbjct: 129 aattgtcccagagacacaaataaaaatactggaaggaacctgtg 172 >D4Rat139 Length = 644 Score = 28.2 bits (14), Expect = 1.2 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 170 cacaaataaaatct 183 |||||||||||||| Sbjct: 213 cacaaataaaatct 200 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 160 Number of Sequences: 1828 Number of extensions: 160 Number of successful extensions: 47 Number of sequences better than 10: 16 length of query: 361 length of database: 1091843 effective HSP length: 14 effective length of query: 347 effective length of database: 1066251 effective search space: 369989097 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)