BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 702b09 (362 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D19Rat19 145 7e-36 D1Rat158 34 0.019 D3Rat20 30 0.30 D7Rat2 26 4.6 D18Rat43 26 4.6 >D19Rat19 Length = 718 Score = 145 bits (73), Expect = 7e-36 Identities = 111/127 (87%), Positives = 111/127 (87%), Gaps = 1/127 (0%) Query: 237 ggggtgggagtatgcatgtgaangtcagtggttatagttggttttcctctttgaatag-t 295 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 152 ggggtgggagtatgcatgtgaaggtcagtggttatagttggttttcctctttgaatagtt 211 Query: 296 ntncnnatntnnnnctangagagcatttcccatanaatctggagttcactaattantcca 355 | | || | ||| |||||||||||||||| |||||||||||||| ||||| |||| Sbjct: 212 tttcttatttttttctaggagagcatttcccatagaatctggagttcacnaattagtcca 271 Query: 356 tgctggc 362 | ||||| Sbjct: 272 ttctggc 278 Score = 69.9 bits (35), Expect = 3e-13 Identities = 35/35 (100%), Positives = 35/35 (100%) Query: 122 ctgtgtgcatatatgagagcgctctgcttttaatt 156 ||||||||||||||||||||||||||||||||||| Sbjct: 37 ctgtgtgcatatatgagagcgctctgcttttaatt 71 >D1Rat158 Length = 623 Score = 34.2 bits (17), Expect = 0.019 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 54 atataaaataaataaat 70 ||||||||||||||||| Sbjct: 59 atataaaataaataaat 75 >D3Rat20 Length = 670 Score = 30.2 bits (15), Expect = 0.30 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 56 ataaaataaataaat 70 ||||||||||||||| Sbjct: 306 ataaaataaataaat 320 >D7Rat2 Length = 449 Score = 26.3 bits (13), Expect = 4.6 Identities = 15/16 (93%), Positives = 15/16 (93%) Query: 59 aaataaataaatgaat 74 |||||||||||| ||| Sbjct: 91 aaataaataaatnaat 76 >D18Rat43 Length = 498 Score = 26.3 bits (13), Expect = 4.6 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 78 agagtggaaacag 90 ||||||||||||| Sbjct: 42 agagtggaaacag 30 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 336 Number of Sequences: 1828 Number of extensions: 336 Number of successful extensions: 122 Number of sequences better than 10: 41 length of query: 362 length of database: 1091843 effective HSP length: 14 effective length of query: 348 effective length of database: 1066251 effective search space: 371055348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)