BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 555c06 (195 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D4Rat77 176 1e-45 D10Rat193 28 0.61 D4Rat98 26 2.4 D2Rat55 26 2.4 >D4Rat77 Length = 586 Score = 176 bits (89), Expect = 1e-45 Identities = 89/89 (100%), Positives = 89/89 (100%) Query: 107 gaggtgggggagcagatatcaagagagtcatcactagcaaactaatgttttatagtttct 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 174 gaggtgggggagcagatatcaagagagtcatcactagcaaactaatgttttatagtttct 115 Query: 167 aagcagaaagtgtgtttctcttagcaatt 195 ||||||||||||||||||||||||||||| Sbjct: 114 aagcagaaagtgtgtttctcttagcaatt 86 Score = 131 bits (66), Expect = 6e-32 Identities = 66/66 (100%), Positives = 66/66 (100%) Query: 1 aattagtcaaatgtcaagatactttatgagtgctaaaaggaagagatattggaataagat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 280 aattagtcaaatgtcaagatactttatgagtgctaaaaggaagagatattggaataagat 221 Query: 61 ctgata 66 |||||| Sbjct: 220 ctgata 215 >D10Rat193 Length = 836 Score = 28.2 bits (14), Expect = 0.61 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 168 agcagaaagtgtgt 181 |||||||||||||| Sbjct: 258 agcagaaagtgtgt 245 >D4Rat98 Length = 545 Score = 26.3 bits (13), Expect = 2.4 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 169 gcagaaagtgtgt 181 ||||||||||||| Sbjct: 248 gcagaaagtgtgt 260 >D2Rat55 Length = 763 Score = 26.3 bits (13), Expect = 2.4 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 154 ttttatagtttct 166 ||||||||||||| Sbjct: 120 ttttatagtttct 132 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 83 Number of Sequences: 1828 Number of extensions: 83 Number of successful extensions: 30 Number of sequences better than 10: 8 length of query: 195 length of database: 1091843 effective HSP length: 14 effective length of query: 181 effective length of database: 1066251 effective search space: 192991431 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 12 (24.3 bits)