BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 301g02 (336 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D17Rat64 98 1e-21 D10Rat190 32 0.069 D2Rat278 26 4.3 D10Rat124 26 4.3 D13Rat134 26 4.3 >D17Rat64 Length = 532 Score = 97.6 bits (49), Expect = 1e-21 Identities = 49/49 (100%), Positives = 49/49 (100%) Query: 231 actctgcagtaaacccatcttctatactacaccctaagtgtctcattca 279 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47 actctgcagtaaacccatcttctatactacaccctaagtgtctcattca 95 Score = 46.1 bits (23), Expect = 5e-06 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 312 tttaatggtcatcactaggaccg 334 ||||||||||||||||||||||| Sbjct: 142 tttaatggtcatcactaggaccg 164 >D10Rat190 Length = 403 Score = 32.2 bits (16), Expect = 0.069 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 195 actgtcctctctcacc 210 |||||||||||||||| Sbjct: 45 actgtcctctctcacc 30 >D2Rat278 Length = 756 Score = 26.3 bits (13), Expect = 4.3 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 119 gtggagaccagtg 131 ||||||||||||| Sbjct: 231 gtggagaccagtg 243 >D10Rat124 Length = 488 Score = 26.3 bits (13), Expect = 4.3 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 140 aatagaatcaagg 152 ||||||||||||| Sbjct: 80 aatagaatcaagg 68 >D13Rat134 Length = 785 Score = 26.3 bits (13), Expect = 4.3 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 117 aggtggagaccag 129 ||||||||||||| Sbjct: 350 aggtggagaccag 362 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 88 Number of Sequences: 1828 Number of extensions: 88 Number of successful extensions: 20 Number of sequences better than 10: 5 length of query: 336 length of database: 1091843 effective HSP length: 14 effective length of query: 322 effective length of database: 1066251 effective search space: 343332822 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)