BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 2545 (190 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D1Rat226 113 1e-26 D2Rat40 30 0.15 D9Rat7 26 2.3 D1Rat68 26 2.3 >D1Rat226 Length = 631 Score = 113 bits (57), Expect = 1e-26 Identities = 62/64 (96%), Positives = 62/64 (96%) Query: 8 acatggttgcacagtgtctttttgttgaangctagttgagttttctctcatgtacgcatg 67 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 218 acatggttgcacagtgtctttttgttgaagactagttgagttttctctcatgtacgcatg 159 Query: 68 catg 71 |||| Sbjct: 158 catg 155 Score = 103 bits (52), Expect = 1e-23 Identities = 59/60 (98%), Positives = 59/60 (98%), Gaps = 1/60 (1%) Query: 132 cagaatgaactctcagacaaaacctctcac-aaaatggtgacagttgagcatttgtgatc 190 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 105 cagaatgaactctcagacaaaacctctcacgaaaatggtgacagttgagcatttgtgatc 46 >D2Rat40 Length = 549 Score = 30.2 bits (15), Expect = 0.15 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 156 tctcacaaaatggtg 170 ||||||||||||||| Sbjct: 286 tctcacaaaatggtg 300 >D9Rat7 Length = 557 Score = 26.3 bits (13), Expect = 2.3 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 16 gcacagtgtcttt 28 ||||||||||||| Sbjct: 293 gcacagtgtcttt 305 >D1Rat68 Length = 550 Score = 26.3 bits (13), Expect = 2.3 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 144 tcagacaaaacct 156 ||||||||||||| Sbjct: 247 tcagacaaaacct 259 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 54 Number of Sequences: 1828 Number of extensions: 54 Number of successful extensions: 13 Number of sequences better than 10: 5 length of query: 190 length of database: 1091843 effective HSP length: 14 effective length of query: 176 effective length of database: 1066251 effective search space: 187660176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 12 (24.3 bits)