BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 196d01 (272 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D19Rat10 202 3e-53 D1Rat49 34 0.014 D9Rat39 30 0.22 D8Rat231 30 0.22 D1Rat58 28 0.86 >D19Rat10 Length = 839 Score = 202 bits (102), Expect = 3e-53 Identities = 104/105 (99%), Positives = 104/105 (99%) Query: 1 aattggttaccacaagagaaactgtccttgggagctgttttgctgccttgtagtaataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 225 aattggttaccacaagagaaactgtccttgggagctgttttgctgccttgtagtaataat 166 Query: 61 ggggtttattttangactaagtaaaacttgcttttgtagtgtgtc 105 ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 165 ggggtttattttaggactaagtaaaacttgcttttgtagtgtgtc 121 Score = 89.7 bits (45), Expect = 3e-19 Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 150 tacacgtgtgtgttagtatgtgcatgtaccttgaggttctggagg 194 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 tacacgtgtgtgttagtatgtgcatgtaccttgaggttctggagg 28 >D1Rat49 Length = 440 Score = 34.2 bits (17), Expect = 0.014 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 206 tggaccccctggagctggagt 226 |||| |||||||||||||||| Sbjct: 49 tggatcccctggagctggagt 69 >D9Rat39 Length = 444 Score = 30.2 bits (15), Expect = 0.22 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 165 gtatgtgcatgtacc 179 ||||||||||||||| Sbjct: 99 gtatgtgcatgtacc 113 >D8Rat231 Length = 807 Score = 30.2 bits (15), Expect = 0.22 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 213 cctggagctggagtt 227 ||||||||||||||| Sbjct: 149 cctggagctggagtt 135 >D1Rat58 Length = 592 Score = 28.2 bits (14), Expect = 0.86 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 209 accccctggagctg 222 |||||||||||||| Sbjct: 580 accccctggagctg 567 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 190 Number of Sequences: 1828 Number of extensions: 190 Number of successful extensions: 65 Number of sequences better than 10: 23 length of query: 272 length of database: 1091843 effective HSP length: 14 effective length of query: 258 effective length of database: 1066251 effective search space: 275092758 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)