BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 159g08 (342 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D2Rat303 78 1e-15 D19Rat26 28 1.1 D19Rat116 28 1.1 D6Rat22 28 1.1 >D2Rat303 Length = 473 Score = 77.8 bits (39), Expect = 1e-15 Identities = 62/70 (88%), Positives = 62/70 (88%) Query: 203 accaatactgtgcaggttttatcactattgctctgtantacagcttgaggccagggatgg 262 |||||||| ||||| ||||||||||||||||||||| ||| ||||||| ||||||| | Sbjct: 352 accaataccatgcagtttttatcactattgctctgtaatactgcttgagttcagggatag 411 Query: 263 tgattccccc 272 |||||||||| Sbjct: 412 tgattccccc 421 >D19Rat26 Length = 420 Score = 28.2 bits (14), Expect = 1.1 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 268 cccccagttctttt 281 |||||||||||||| Sbjct: 69 cccccagttctttt 56 >D19Rat116 Length = 800 Score = 28.2 bits (14), Expect = 1.1 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 313 tttttgtttttcca 326 |||||||||||||| Sbjct: 37 tttttgtttttcca 24 >D6Rat22 Length = 501 Score = 28.2 bits (14), Expect = 1.1 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 311 gctttttgtttttc 324 |||||||||||||| Sbjct: 175 gctttttgtttttc 162 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 233 Number of Sequences: 1828 Number of extensions: 233 Number of successful extensions: 46 Number of sequences better than 10: 12 length of query: 342 length of database: 1091843 effective HSP length: 14 effective length of query: 328 effective length of database: 1066251 effective search space: 349730328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)