BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 063g01 (296 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D4Rat68 143 2e-35 D2Rat61 44 2e-05 D10Rat122 38 0.001 D2Rat42 36 0.004 D1Rat233 36 0.004 >D4Rat68 Length = 646 Score = 143 bits (72), Expect = 2e-35 Identities = 79/82 (96%), Positives = 79/82 (96%) Query: 112 cttcccaagtgctggagttgtaggtgtgagtaccatacttgtctagtggggtacctctga 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 48 cttcccaagtgctggagttgtaggtgtgagtaccatacttgtctagtggggtacctctga 107 Query: 172 gtggggngnatttacacacata 193 |||||| ||||||||||||| Sbjct: 108 gtggggaaaatttacacacata 129 Score = 103 bits (52), Expect = 2e-23 Identities = 52/52 (100%), Positives = 52/52 (100%) Query: 245 acacacacaccactttgtagagcgattccttagcatgcaccaagtcctgagt 296 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 167 acacacacaccactttgtagagcgattccttagcatgcaccaagtcctgagt 218 >D2Rat61 Length = 712 Score = 26.3 bits (13), Expect = 3.7 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 114 tcccaagtgctgg 126 ||||||||||||| Sbjct: 66 tcccaagtgctgg 78 Score = 44.1 bits (22), Expect = 2e-05 Identities = 28/30 (93%), Positives = 28/30 (93%) Query: 60 cacctttaatcccagcactggggagacaga 89 ||||||||||||||||||| ||||| |||| Sbjct: 89 cacctttaatcccagcacttgggagtcaga 60 >D10Rat122 Length = 598 Score = 38.2 bits (19), Expect = 0.001 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 60 cacctttaatcccagcact 78 ||||||||||||||||||| Sbjct: 307 cacctttaatcccagcact 325 >D2Rat42 Length = 630 Score = 36.2 bits (18), Expect = 0.004 Identities = 24/26 (92%), Positives = 24/26 (92%) Query: 64 tttaatcccagcactggggagacaga 89 ||||||||||||||| ||||| |||| Sbjct: 286 tttaatcccagcacttgggaggcaga 311 Score = 26.3 bits (13), Expect = 3.7 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 114 tcccaagtgctgg 126 ||||||||||||| Sbjct: 305 tcccaagtgctgg 293 >D1Rat233 Length = 485 Score = 36.2 bits (18), Expect = 0.004 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 62 cctttaatcccagcactg 79 |||||||||||||||||| Sbjct: 97 cctttaatcccagcactg 80 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1084 Number of Sequences: 1828 Number of extensions: 1084 Number of successful extensions: 246 Number of sequences better than 10: 118 length of query: 296 length of database: 1091843 effective HSP length: 14 effective length of query: 282 effective length of database: 1066251 effective search space: 300682782 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)