BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 055b04 (427 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D12Rat97 109 5e-25 D8Rat75 72 1e-13 D5Rat53 30 0.35 D13Rat53 28 1.4 D19Rat27 28 1.4 >D12Rat97 Length = 831 Score = 109 bits (55), Expect = 5e-25 Identities = 106/117 (90%), Positives = 106/117 (90%), Gaps = 5/117 (4%) Query: 3 tctttccagtttntggttattatatataagg-tgcgatgaacatagtgga-gcacgtntc 60 ||||||||| || ||| ||||||| |||||| ||| |||||||||||||| |||||| || Sbjct: 419 tctttccagcttctggctattataaataaggctgcaatgaacatagtggaagcacgtgtc 360 Query: 61 ttttttatatg-ttggggcatcttttgggtatatg-cccaagag-aggtatagctgg 114 ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 359 ttttttatatgnttggggcatcttttgggtatatgncccaagagtaggtatagctgg 303 >D8Rat75 Length = 520 Score = 71.9 bits (36), Expect = 1e-13 Identities = 42/44 (95%), Positives = 42/44 (95%) Query: 71 gttggggcatcttttgggtatatgcccaagagaggtatagctgg 114 ||||| |||||||||||||||||||||| ||||||||||||||| Sbjct: 46 gttggagcatcttttgggtatatgcccaggagaggtatagctgg 89 >D5Rat53 Length = 789 Score = 30.2 bits (15), Expect = 0.35 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 404 aactgggaaaataca 418 ||||||||||||||| Sbjct: 223 aactgggaaaataca 209 >D13Rat53 Length = 526 Score = 28.2 bits (14), Expect = 1.4 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 364 tgagtgtgcatgtg 377 |||||||||||||| Sbjct: 316 tgagtgtgcatgtg 303 >D19Rat27 Length = 815 Score = 28.2 bits (14), Expect = 1.4 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 360 tgcctgagtgtgca 373 |||||||||||||| Sbjct: 168 tgcctgagtgtgca 155 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 266 Number of Sequences: 1828 Number of extensions: 266 Number of successful extensions: 78 Number of sequences better than 10: 12 length of query: 427 length of database: 1091843 effective HSP length: 14 effective length of query: 413 effective length of database: 1066251 effective search space: 440361663 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)