BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 02733 (412 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D1Rat124 68 2e-12 D10Rat55 28 1.3 DXRat9 28 1.3 >D1Rat124 Length = 915 Score = 67.9 bits (34), Expect = 2e-12 Identities = 49/53 (92%), Positives = 49/53 (92%), Gaps = 1/53 (1%) Query: 274 ctcaatgaatccttcctctcctt-gattttccaagcctacctacgtcttatga 325 |||||| |||||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 45 ctcaataaatccttcctctccttagattttccaagactncctacgtcttatga 97 Score = 32.2 bits (16), Expect = 0.085 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 396 ctggctttgaagggat 411 |||||||||||||||| Sbjct: 156 ctggctttgaagggat 171 >D10Rat55 Length = 707 Score = 28.2 bits (14), Expect = 1.3 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 397 tggctttgaaggga 410 |||||||||||||| Sbjct: 316 tggctttgaaggga 329 >DXRat9 Length = 634 Score = 28.2 bits (14), Expect = 1.3 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 292 tccttgattttcca 305 |||||||||||||| Sbjct: 445 tccttgattttcca 432 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 160 Number of Sequences: 1828 Number of extensions: 160 Number of successful extensions: 46 Number of sequences better than 10: 5 length of query: 412 length of database: 1091843 effective HSP length: 14 effective length of query: 398 effective length of database: 1066251 effective search space: 424367898 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)