BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01729 (452 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D4Rat244 188 7e-49 D3Rat285 30 0.37 D2Rat251 30 0.37 D1Rat210 28 1.5 D10Rat73 28 1.5 >D4Rat244 Length = 434 Score = 115 bits (58), Expect = 8e-27 Identities = 58/58 (100%), Positives = 58/58 (100%) Query: 173 cgcccctttttggatgaggatgaggttataactaaattacacttttttaaaaaatcag 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 339 cgcccctttttggatgaggatgaggttataactaaattacacttttttaaaaaatcag 396 Score = 188 bits (95), Expect = 7e-49 Identities = 109/116 (93%), Positives = 109/116 (93%) Query: 1 gatcagccaattatggaattttaagaaatacatcaaccccattagatttcaannnnnnng 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 159 gatcagccaattatggaattttaagaaatacatcaaccccattagatttcaatttttttg 218 Query: 61 aggatatttgagagactgcttttcactcctgactctttctctttagaatttataaa 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 219 aggatatttgagagactgcttttcactcctgactctttctctttagaatttataaa 274 >D3Rat285 Length = 880 Score = 30.2 bits (15), Expect = 0.37 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 372 gacaaggtctcatgt 386 ||||||||||||||| Sbjct: 70 gacaaggtctcatgt 56 >D2Rat251 Length = 950 Score = 30.2 bits (15), Expect = 0.37 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 214 cttttttaaaaaatc 228 ||||||||||||||| Sbjct: 350 cttttttaaaaaatc 364 >D1Rat210 Length = 515 Score = 28.2 bits (14), Expect = 1.5 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 357 tgagtttagttttt 370 |||||||||||||| Sbjct: 242 tgagtttagttttt 229 >D10Rat73 Length = 539 Score = 28.2 bits (14), Expect = 1.5 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 400 tgacctcaaattca 413 |||||||||||||| Sbjct: 151 tgacctcaaattca 138 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 218 Number of Sequences: 1828 Number of extensions: 218 Number of successful extensions: 66 Number of sequences better than 10: 9 length of query: 452 length of database: 1091843 effective HSP length: 15 effective length of query: 437 effective length of database: 1064423 effective search space: 465152851 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)