BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 00141 (398 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D12Rat97 70 4e-13 D16Rat25 34 0.021 D15Rat130 34 0.021 D17Rat32 30 0.33 D5Rat196 28 1.3 >D12Rat97 Length = 831 Score = 69.9 bits (35), Expect = 4e-13 Identities = 66/74 (89%), Positives = 66/74 (89%), Gaps = 2/74 (2%) Query: 60 atataacaaggacacgtg-ttccactatgttcacagca-ccttatttataatagccagaa 117 |||||| || |||||||| |||||||||||||| ||| ||||||||||||||||||||| Sbjct: 350 atataaaaaagacacgtgcttccactatgttcattgcagccttatttataatagccagaa 409 Query: 118 tctgganagaaccc 131 ||||| ||||||| Sbjct: 410 gctggaaagaaccc 423 >D16Rat25 Length = 536 Score = 34.2 bits (17), Expect = 0.021 Identities = 34/40 (85%), Positives = 34/40 (85%) Query: 125 agaacccatatgtccctcaacagacaaatggatacagaaa 164 |||||||| |||||| || |||| |||||||||||||| Sbjct: 320 agaacccagatgtccgtcgncagaggaatggatacagaaa 281 >D15Rat130 Length = 504 Score = 34.2 bits (17), Expect = 0.021 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 250 aactagaaaatatcatc 266 ||||||||||||||||| Sbjct: 82 aactagaaaatatcatc 66 Score = 28.2 bits (14), Expect = 1.3 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 151 aatggatacagaaa 164 |||||||||||||| Sbjct: 139 aatggatacagaaa 126 >D17Rat32 Length = 455 Score = 30.2 bits (15), Expect = 0.33 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 384 aagatacaatccaca 398 ||||||||||||||| Sbjct: 62 aagatacaatccaca 48 >D5Rat196 Length = 451 Score = 28.2 bits (14), Expect = 1.3 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 248 gaaactagaaaata 261 |||||||||||||| Sbjct: 304 gaaactagaaaata 317 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 137 Number of Sequences: 1828 Number of extensions: 137 Number of successful extensions: 45 Number of sequences better than 10: 5 length of query: 398 length of database: 1091843 effective HSP length: 14 effective length of query: 384 effective length of database: 1066251 effective search space: 409440384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)