BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 963d04 (394 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.12103 UI-R-E0-dk-e-02-0-UI.s1 Rattus norvegicus cDNA,... 143 4e-34 gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOW... 82 1e-15 gnl|UG|Rn.29314 EST223296 Rattus norvegicus cDNA, 3' end /clone... 66 8e-11 gnl|UG|Rn.34352 EST200508 Rattus norvegicus cDNA, 3' end /clone... 60 5e-09 gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone... 60 5e-09 >gnl|UG|Rn.12103 UI-R-E0-dk-e-02-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-dk-e-02-0-UI /clone_end=3' /gb=AA900802 /gi=3036156 /len=476 Length = 476 Score = 143 bits (72), Expect = 4e-34 Identities = 91/96 (94%), Positives = 91/96 (94%), Gaps = 1/96 (1%) Query: 4 gatcctcaggcagttcaatgtccaattttctgaggaaca-ccagactgatttccagagtg 62 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 69 gatcctcaggcagttcaatgtccaattttctgaggaacctccagactgatttccagaatg 128 Query: 63 gttgtaccagcttgcaatcccaccaacaatggagga 98 |||||||||| |||||||||||||||||||||||| Sbjct: 129 gttgtaccagtctgcaatcccaccaacaatggagga 164 >gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOWN /gb=X71442 /gi=311509 /len=1050 Length = 1050 Score = 81.8 bits (41), Expect = 1e-15 Identities = 87/101 (86%), Positives = 87/101 (86%), Gaps = 1/101 (0%) Query: 233 atattagcccaaga-ctcaaattacacaagatacaatccacagaccccatgaagctcaag 291 |||||||||||| | |||||||||| |||||||||| ||||| ||| ||||||| ||||| Sbjct: 311 atattagcccaaaagctcaaattacccaagatacaacccacacaccacatgaagttcaag 370 Query: 292 aagaaggacaacaaaagtgcagatgcttcggtccttcttaa 332 |||||||| || ||||| | ||||||| ||||||||||| Sbjct: 371 aagaaggatgaccaaagtacggatgctttagtccttcttaa 411 Score = 65.9 bits (33), Expect = 8e-11 Identities = 52/57 (91%), Positives = 52/57 (91%), Gaps = 1/57 (1%) Query: 103 tcatgaaattcataggcaaatggatggaactagaaaa-atcatcctaagtaaggtaa 158 |||||||||| ||||| |||||||||||||||||||| |||||||| ||| |||||| Sbjct: 209 tcatgaaatttataggtaaatggatggaactagaaaatatcatcctgagtgaggtaa 265 >gnl|UG|Rn.29314 EST223296 Rattus norvegicus cDNA, 3' end /clone=RSPCJ14 /clone_end=3' /gb=AI179574 /gi=3730212 /len=359 Length = 359 Score = 65.9 bits (33), Expect = 8e-11 Identities = 42/45 (93%), Positives = 42/45 (93%) Query: 200 ataaatgcatggtatgcactcactgataagtggatattagcccaa 244 ||||| ||||||||||||||||||| ||||||||||||| ||||| Sbjct: 230 ataaaagcatggtatgcactcactggtaagtggatattaacccaa 274 Score = 40.1 bits (20), Expect = 0.005 Identities = 26/28 (92%), Positives = 26/28 (92%) Query: 104 catgaaattcataggcaaatggatggaa 131 ||||||||||||| | |||||||||||| Sbjct: 137 catgaaattcataagtaaatggatggaa 164 >gnl|UG|Rn.34352 EST200508 Rattus norvegicus cDNA, 3' end /clone=RLIAF19 /clone_end=3' /gb=AA945009 /gi=3104925 /len=461 Length = 461 Score = 60.0 bits (30), Expect = 5e-09 Identities = 48/54 (88%), Positives = 48/54 (88%) Query: 265 caatccacagaccccatgaagctcaagaagaaggacaacaaaagtgcagatgct 318 ||||||||||||| || |||||||||||||||||| || ||| |||||||||| Sbjct: 375 caatccacagaccacaggaagctcaagaagaaggatgaccaaaatgcagatgct 428 >gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone=RPLCA56 /clone_end=3' /gb=AI177487 /gi=3728125 /len=454 Length = 454 Score = 60.0 bits (30), Expect = 5e-09 Identities = 36/38 (94%), Positives = 36/38 (94%) Query: 207 catggtatgcactcactgataagtggatattagcccaa 244 ||||||||||||||| |||||||||| ||||||||||| Sbjct: 211 catggtatgcactcattgataagtggctattagcccaa 248 Score = 48.1 bits (24), Expect = 2e-05 Identities = 40/44 (90%), Positives = 40/44 (90%), Gaps = 1/44 (2%) Query: 105 atgaaattcataggcaaatggatggaactagaaaa-atcatcct 147 ||||||||| ||||||||||| ||||||| ||||| |||||||| Sbjct: 136 atgaaattcgtaggcaaatggttggaactggaaaatatcatcct 179 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3200 Number of Sequences: 23003 Number of extensions: 3200 Number of successful extensions: 864 Number of sequences better than 10: 40 length of query: 394 length of database: 15818664 effective HSP length: 16 effective length of query: 378 effective length of database: 15450616 effective search space: 5840332848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)