BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 934e08 (334 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.4190 Rattus norvegicus type 1 astrocyte and olfactory... 438 e-123 gnl|UG|Rn.6436 UI-R-C2-no-a-01-0-UI.s1 Rattus norvegicus cDNA, ... 34 0.25 gnl|UG|Rn.19306 UI-R-C1-jv-e-01-0-UI.s1 Rattus norvegicus cDNA,... 32 0.99 gnl|UG|Rn.24207 EST222966 Rattus norvegicus cDNA, 3' end /clone... 30 3.9 gnl|UG|Rn.9758 Rattus notvegicus Sprague-Dawley interleukin-1 r... 30 3.9 >gnl|UG|Rn.4190 Rattus norvegicus type 1 astrocyte and olfactory-limbic associated protein AT1-46 mRNA, complete cds /cds=(782,2200) /gb=U33472 /gi=1373040 /len=4301 Length = 4301 Score = 438 bits (221), Expect = e-123 Identities = 237/245 (96%), Positives = 237/245 (96%) Query: 90 gacagggagaggcaaaatgagatggcataaaatgtcagaaaccagcagaatgaacatttc 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2768 gacagggagaggcaaaatgagatggcataaaatgtcagaaaccagcagaatgaacatttc 2709 Query: 150 tggcctccctntccccactccctacccccacatacacagcgtctcatcgagcacaaagtc 209 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2708 tggcctccctttccccactccctacccccacatacacagcgtctcatcgagcacaaagtc 2649 Query: 210 agctgtgcgaancagggtaatggggacaccccngagagctggctgctganaancaaaatg 269 ||||||||||| |||||||||||||||||||| |||||||||||||||| || ||||||| Sbjct: 2648 agctgtgcgaagcagggtaatggggacacccctgagagctggctgctgagaagcaaaatg 2589 Query: 270 gctctgagggatgtnttccaacactgtgaggaattactgaagganaagaaaaaaccacaa 329 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2588 gctctgagggatgttttccaacactgtgaggaattactgaaggagaagaaaaaaccacaa 2529 Query: 330 ngatc 334 |||| Sbjct: 2528 ggatc 2524 Score = 73.8 bits (37), Expect = 3e-13 Identities = 37/37 (100%), Positives = 37/37 (100%) Query: 2 cgatcaggttcaggagggccaagttgtgtgtttgcat 38 ||||||||||||||||||||||||||||||||||||| Sbjct: 2856 cgatcaggttcaggagggccaagttgtgtgtttgcat 2820 >gnl|UG|Rn.6436 UI-R-C2-no-a-01-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C2-no-a-01-0-UI /clone_end=3' /gb=AI070726 /gi=3396977 /len=408 Length = 408 Score = 34.2 bits (17), Expect = 0.25 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 115 cataaaatgtcagaaac 131 ||||||||||||||||| Sbjct: 48 cataaaatgtcagaaac 64 >gnl|UG|Rn.19306 UI-R-C1-jv-e-01-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C1-jv-e-01-0-UI /clone_end=3' /gb=AI044111 /gi=3291014 /len=479 Length = 479 Score = 32.2 bits (16), Expect = 0.99 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 87 agagacagggagaggc 102 |||||||||||||||| Sbjct: 290 agagacagggagaggc 305 >gnl|UG|Rn.24207 EST222966 Rattus norvegicus cDNA, 3' end /clone=RSPCE56 /clone_end=3' /gb=AI179273 /gi=3729911 /len=396 Length = 396 Score = 30.2 bits (15), Expect = 3.9 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 135 cagaatgaacatttc 149 ||||||||||||||| Sbjct: 309 cagaatgaacatttc 295 >gnl|UG|Rn.9758 Rattus notvegicus Sprague-Dawley interleukin-1 receptor type I mRNA, complete cds /cds=(321,2093) /gb=M95578 /gi=451305 /len=2187 Length = 2187 Score = 30.2 bits (15), Expect = 3.9 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 132 cagcagaatgaacat 146 ||||||||||||||| Sbjct: 598 cagcagaatgaacat 612 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2514 Number of Sequences: 23003 Number of extensions: 2514 Number of successful extensions: 638 Number of sequences better than 10: 17 length of query: 334 length of database: 15818664 effective HSP length: 16 effective length of query: 318 effective length of database: 15450616 effective search space: 4913295888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)