BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 911e04 (371 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOW... 141 2e-33 gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone... 135 1e-31 gnl|UG|Rn.23242 UI-R-C0-gr-h-08-0-UI.s1 Rattus norvegicus cDNA,... 80 5e-15 gnl|UG|Rn.15647 UI-R-A1-el-d-05-0-UI.s1 Rattus norvegicus cDNA,... 64 3e-10 gnl|UG|Rn.29314 EST223296 Rattus norvegicus cDNA, 3' end /clone... 58 2e-08 >gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOWN /gb=X71442 /gi=311509 /len=1050 Length = 1050 Score = 141 bits (71), Expect = 2e-33 Identities = 123/140 (87%), Positives = 123/140 (87%), Gaps = 3/140 (2%) Query: 231 gatagctgagtagtactccattgggtagatgtacaac---attttctgaaaccattcctc 287 ||||||||||||||||||||||| |||||||||| | |||||||| | ||||||| | Sbjct: 195 gatagctgagtagtactccattgtgtagatgtaccaatggattttctgtatccattcccc 136 Query: 288 tgctgaagggcaactgggttctttccagcttctggctantataaataaggctactatgaa 347 || ||||||||| |||||||||||||||||||| ||| ||| ||||||||| ||||||| Sbjct: 135 tgttgaagggcatatgggttctttccagcttctgtctattatgaataaggctgctatgaa 76 Query: 348 catagtggagcatgtgtctt 367 || ||||||||||||||||| Sbjct: 75 cagagtggagcatgtgtctt 56 Score = 40.1 bits (20), Expect = 0.005 Identities = 29/32 (90%), Positives = 29/32 (90%) Query: 5 atcttgggtaattcaagctttggggctaatat 36 ||||||||||||| |||||| |||||||||| Sbjct: 342 atcttgggtaatttgagcttttgggctaatat 311 >gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone=RPLCA56 /clone_end=3' /gb=AI177487 /gi=3728125 /len=454 Length = 454 Score = 135 bits (68), Expect = 1e-31 Identities = 162/194 (83%), Positives = 162/194 (83%), Gaps = 2/194 (1%) Query: 159 tgggttatctcactcaaaatgatattngctagttccatccatttgcctatgaatgccata 218 ||||||| |||||||| |||||||| | ||||||| ||||||||||| |||| |||| Sbjct: 194 tgggttagctcactcaggatgatattttccagttccaaccatttgcctacgaatttcata 135 Query: 219 aagtcatn--tnnagatagctgagtagtactccattgggtagatgtacaacattttctga 276 || || | | |||||||||||| || ||||||| |||||||||| |||||||||| Sbjct: 134 aactcgttgtttttgatagctgagtaatattccattgtgtagatgtaccacattttctgt 75 Query: 277 aaccattcctctgctgaagggcaactgggttctttccagcttctggctantataaataag 336 | ||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct: 74 atccattcctctgttgaagggcatctgggttctttccattttctggctattataaataaa 15 Query: 337 gctactatgaacat 350 ||| | |||||||| Sbjct: 14 gctgcgatgaacat 1 >gnl|UG|Rn.23242 UI-R-C0-gr-h-08-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-gr-h-08-0-UI /clone_end=3' /gb=AA965019 /gi=3138511 /len=503 Length = 503 Score = 79.8 bits (40), Expect = 5e-15 Identities = 67/76 (88%), Positives = 67/76 (88%) Query: 231 gatagctgagtagtactccattgggtagatgtacaacattttctgaaaccattcctctgc 290 |||||||||||| || ||||||| |||||| ||| |||||||||| | ||||||||||| Sbjct: 469 gatagctgagtaatattccattgtgtagatataccacattttctgtatccattcctctgt 410 Query: 291 tgaagggcaactgggt 306 ||||||||| |||||| Sbjct: 409 tgaagggcatctgggt 394 >gnl|UG|Rn.15647 UI-R-A1-el-d-05-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-A1-el-d-05-0-UI /clone_end=3' /gb=AA926061 /gi=3073197 /len=499 Length = 499 Score = 63.9 bits (32), Expect = 3e-10 Identities = 100/123 (81%), Positives = 100/123 (81%) Query: 232 atagctgagtagtactccattgggtagatgtacaacattttctgaaaccattcctctgct 291 |||||||||||||||||||||| || |||||| |||||||||| | ||||| | || | Sbjct: 140 atagctgagtagtactccattgtttaaatgtaccacattttctgtattcattcttttgtt 81 Query: 292 gaagggcaactgggttctttccagcttctggctantataaataaggctactatgaacata 351 || || || | | || ||||||| ||||||||| | | ||||| ||| ||||||||||| Sbjct: 80 gagggacattttgattgtttccagtttctggctattgtgaataaagctgctatgaacata 21 Query: 352 gtg 354 ||| Sbjct: 20 gtg 18 >gnl|UG|Rn.29314 EST223296 Rattus norvegicus cDNA, 3' end /clone=RSPCJ14 /clone_end=3' /gb=AI179574 /gi=3730212 /len=359 Length = 359 Score = 58.0 bits (29), Expect = 2e-08 Identities = 82/100 (82%), Positives = 82/100 (82%) Query: 232 atagctgagtagtactccattgggtagatgtacaacattttctgaaaccattcctctgct 291 |||||||||||| || ||||| | | |||||| || ||||| | | ||||||||||||| Sbjct: 121 atagctgagtagctcttcattgtgcaaatgtaccaccttttcagtatccattcctctgct 62 Query: 292 gaagggcaactgggttctttccagcttctggctantataa 331 || || |||| |||||||||||||||||||| ||||| Sbjct: 61 gagacacatctggattctttccagcttctggctattataa 22 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1996 Number of Sequences: 23003 Number of extensions: 1996 Number of successful extensions: 582 Number of sequences better than 10: 32 length of query: 371 length of database: 15818664 effective HSP length: 16 effective length of query: 355 effective length of database: 15450616 effective search space: 5484968680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)