BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 848g11 (385 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel AS... 70 5e-12 gnl|UG|Rn.8107 EST227018 Rattus norvegicus cDNA, 3' end /clone=... 50 5e-06 gnl|UG|Rn.21262 UI-R-C1-lp-b-10-0-UI.s1 Rattus norvegicus cDNA,... 46 8e-05 gnl|UG|Rn.8817 EST200682 Rattus norvegicus cDNA, 3' end /clone=... 44 3e-04 gnl|UG|Rn.33542 UI-R-Y0-mg-e-04-0-UI.s1 Rattus norvegicus cDNA,... 44 3e-04 >gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel ASIC1 mRNA, complete cds /cds=(122,1702) /gb=U94403 /gi=2039365 /len=3488 Length = 3488 Score = 69.9 bits (35), Expect = 5e-12 Identities = 44/47 (93%), Positives = 44/47 (93%) Query: 338 cagggactagacaaggctgcccactctctccctacttattcaatata 384 |||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2573 caggaactagacaaggctgcccactctctccctatctattcaatata 2527 >gnl|UG|Rn.8107 EST227018 Rattus norvegicus cDNA, 3' end /clone=REMCV04 /clone_end=3' /gb=AI230323 /gi=3814210 /len=476 Length = 476 Score = 50.1 bits (25), Expect = 5e-06 Identities = 44/49 (89%), Positives = 44/49 (89%), Gaps = 1/49 (2%) Query: 269 caaaccaagagctttgcacatgctggccaagcactctaccactgagcta 317 |||||| ||||| |||||| |||| || ||||||||||||||||||||| Sbjct: 170 caaacccagagccttgcacttgctagc-aagcactctaccactgagcta 123 >gnl|UG|Rn.21262 UI-R-C1-lp-b-10-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C1-lp-b-10-0-UI /clone_end=3' /gb=AI070161 /gi=3396412 /len=344 Length = 344 Score = 46.1 bits (23), Expect = 8e-05 Identities = 29/31 (93%), Positives = 29/31 (93%) Query: 285 cacatgctggccaagcactctaccactgagc 315 |||||||| || ||||||||||||||||||| Sbjct: 132 cacatgcttgctaagcactctaccactgagc 102 >gnl|UG|Rn.8817 EST200682 Rattus norvegicus cDNA, 3' end /clone=RLIAH59 /clone_end=3' /gb=AA945183 /gi=3105099 /len=659 Length = 659 Score = 44.1 bits (22), Expect = 3e-04 Identities = 22/22 (100%), Positives = 22/22 (100%) Query: 296 caagcactctaccactgagcta 317 |||||||||||||||||||||| Sbjct: 533 caagcactctaccactgagcta 554 >gnl|UG|Rn.33542 UI-R-Y0-mg-e-04-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-Y0-mg-e-04-0-UI /clone_end=3' /gb=AI112329 /gi=3512278 /len=564 Length = 564 Score = 44.1 bits (22), Expect = 3e-04 Identities = 22/22 (100%), Positives = 22/22 (100%) Query: 296 caagcactctaccactgagcta 317 |||||||||||||||||||||| Sbjct: 468 caagcactctaccactgagcta 489 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3602 Number of Sequences: 23003 Number of extensions: 3602 Number of successful extensions: 1144 Number of sequences better than 10: 210 length of query: 385 length of database: 15818664 effective HSP length: 16 effective length of query: 369 effective length of database: 15450616 effective search space: 5701277304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)