BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 836a03 (353 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.10446 Rat glucose-dependent insulinotropic peptide mR... 218 8e-57 gnl|UG|Rn.10408 Rnorvegicus mRNA for Bovine C4BP alpha chain pr... 32 1.0 gnl|UG|Rn.24565 EST228016 Rattus norvegicus cDNA, 3' end /clone... 32 1.0 gnl|UG|Rn.31825 UI-R-E0-cy-a-11-0-UI.s1 Rattus norvegicus cDNA,... 32 1.0 gnl|UG|Rn.16521 EST218097 Rattus norvegicus cDNA, 3' end /clone... 30 4.1 >gnl|UG|Rn.10446 Rat glucose-dependent insulinotropic peptide mRNA exons 1-5, complete cds /cds=UNKNOWN /gb=M92916 /gi=294554 /len=2952 Length = 2952 Score = 218 bits (110), Expect = 8e-57 Identities = 124/130 (95%), Positives = 124/130 (95%) Query: 4 gatcctgcttcagccctggtccaaagtctctgagagaaccanaccaataaagccttgagc 63 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 2700 gatcctgcttctgccctggtccaaagtctctgagagaaccaaaccaataaagccttgagc 2759 Query: 64 tgaaataaaccntggtgtccattgtgaaaactcattcaaatgtcagctgagcactcncag 123 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2760 tgaagtaaaccttggtgtccattgtgaaaactcattcaaatgtcagctgagcactcacag 2819 Query: 124 ggcanggctc 133 |||| ||||| Sbjct: 2820 ggcatggctc 2829 Score = 165 bits (83), Expect = 1e-40 Identities = 94/98 (95%), Positives = 94/98 (95%) Query: 188 tatcatgggtgtccatgccacccaaggaaaagggacacatccagctattcctcgatgaat 247 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 2854 tatcttgggtgtccatgccacccaaggaaaagggacacatccagctattcctctatgaat 2913 Query: 248 cttacaaccatacgggaaccnacacagaccagacgaat 285 |||||||||||||||||||| |||||||||||| |||| Sbjct: 2914 cttacaaccatacgggaaccaacacagaccagaggaat 2951 >gnl|UG|Rn.10408 Rnorvegicus mRNA for Bovine C4BP alpha chain protein /cds=(48,1724) /gb=Z50051 /gi=899379 /len=1882 Length = 1882 Score = 32.2 bits (16), Expect = 1.0 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 76 tggtgtccattgtgaa 91 |||||||||||||||| Sbjct: 1362 tggtgtccattgtgaa 1347 >gnl|UG|Rn.24565 EST228016 Rattus norvegicus cDNA, 3' end /clone=REMDI65 /clone_end=3' /gb=AI231328 /gi=3815208 /len=569 Length = 569 Score = 32.2 bits (16), Expect = 1.0 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 20 tggtccaaagtctctgagag 39 |||||||||||||| ||||| Sbjct: 21 tggtccaaagtctcagagag 40 >gnl|UG|Rn.31825 UI-R-E0-cy-a-11-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-cy-a-11-0-UI /clone_end=3' /gb=AA899663 /gi=3035017 /len=531 Length = 531 Score = 32.2 bits (16), Expect = 1.0 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 84 attgtgaaaactcatt 99 |||||||||||||||| Sbjct: 471 attgtgaaaactcatt 456 >gnl|UG|Rn.16521 EST218097 Rattus norvegicus cDNA, 3' end /clone=RMUBU94 /clone_end=3' /gb=AI172102 /gi=3712142 /len=560 Length = 560 Score = 30.2 bits (15), Expect = 4.1 Identities = 18/19 (94%), Positives = 18/19 (94%) Query: 210 caaggaaaagggacacatc 228 ||||||||||| ||||||| Sbjct: 499 caaggaaaaggaacacatc 517 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1810 Number of Sequences: 23003 Number of extensions: 1810 Number of successful extensions: 505 Number of sequences better than 10: 11 length of query: 353 length of database: 15818664 effective HSP length: 16 effective length of query: 337 effective length of database: 15450616 effective search space: 5206857592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)