BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 802c11 (347 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.25716 Rat mRNA for delta-4-3-ketosteroid 5-beta-reduc... 84 3e-16 gnl|UG|Rn.10850 Rattus norvegicus Mint1 mRNA, complete cds /cds... 60 5e-09 gnl|UG|Rn.15887 UI-R-C0-is-c-12-0-UI.s1 Rattus norvegicus cDNA,... 52 1e-06 gnl|UG|Rn.15777 EST206214 Rattus norvegicus cDNA, 3' end /clone... 40 0.004 gnl|UG|Rn.33984 EST221645 Rattus norvegicus cDNA, 3' end /clone... 38 0.017 >gnl|UG|Rn.25716 Rat mRNA for delta-4-3-ketosteroid 5-beta-reductase, complete cds /cds=(40,1020) /gb=D17309 /gi=450474 /len=3189 Length = 3189 Score = 83.8 bits (42), Expect = 3e-16 Identities = 83/97 (85%), Positives = 83/97 (85%) Query: 248 tcacccacccacctactccctcccacctccctgccctgacattcccctacacaggggcat 307 ||||||||| ||| ||||| |||| ||||||||||||||||||||||||||| ||| | Sbjct: 2527 tcacccacctacccactccttccctcctccctgccctgacattcccctacactagggggt 2586 Query: 308 taagtcttgacaggatgaanggcctctcctcccattg 344 ||||||| ||||| || ||||||||||||||||| Sbjct: 2587 cgagtcttggcaggaccaagggcctctcctcccattg 2623 >gnl|UG|Rn.10850 Rattus norvegicus Mint1 mRNA, complete cds /cds=(561,3080) /gb=AF029105 /gi=2625022 /len=3901 Length = 3901 Score = 60.0 bits (30), Expect = 5e-09 Identities = 36/38 (94%), Positives = 36/38 (94%) Query: 262 actccctcccacctccctgccctgacattcccctacac 299 ||||||||| ||||| |||||||||||||||||||||| Sbjct: 198 actccctcctacctctctgccctgacattcccctacac 161 >gnl|UG|Rn.15887 UI-R-C0-is-c-12-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-is-c-12-0-UI /clone_end=3' /gb=AI044352 /gi=3291255 /len=282 Length = 282 Score = 52.0 bits (26), Expect = 1e-06 Identities = 59/70 (84%), Positives = 59/70 (84%) Query: 253 cacccacctactccctcccacctccctgccctgacattcccctacacaggggcattaagt 312 |||||| | ||||||||||| ||||||||||| |||||||| ||| ||||||| ||| Sbjct: 148 cacccatccactccctcccaataccctgccctgatattcccctccactggggcatcaagc 207 Query: 313 cttgacagga 322 | |||||||| Sbjct: 208 catgacagga 217 >gnl|UG|Rn.15777 EST206214 Rattus norvegicus cDNA, 3' end /clone=ROVAZ82 /clone_end=3' /gb=AI011763 /gi=3225595 /len=606 Length = 606 Score = 40.1 bits (20), Expect = 0.004 Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 266 cctcccacctccctgccctg 285 |||||||||||||||||||| Sbjct: 200 cctcccacctccctgccctg 181 >gnl|UG|Rn.33984 EST221645 Rattus norvegicus cDNA, 3' end /clone=RPLCJ60 /clone_end=3' /gb=AI177989 /gi=3728627 /len=417 Length = 417 Score = 38.2 bits (19), Expect = 0.017 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 328 ggcctctcctcccattgat 346 ||||||||||||||||||| Sbjct: 186 ggcctctcctcccattgat 204 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2553 Number of Sequences: 23003 Number of extensions: 2553 Number of successful extensions: 766 Number of sequences better than 10: 21 length of query: 347 length of database: 15818664 effective HSP length: 16 effective length of query: 331 effective length of database: 15450616 effective search space: 5114153896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)