BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 731d11 (242 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.3977 EST226397 Rattus norvegicus cDNA, 3' end /clone=... 32 0.70 gnl|UG|Rn.32576 UI-R-A1-dr-h-10-0-UI.s1 Rattus norvegicus cDNA,... 32 0.70 gnl|UG|Rn.11051 Rat Munc18-1 mRNA, complete cds /cds=(287,2071)... 30 2.8 gnl|UG|Rn.228 Rattus norvegicus mRNA for 7-dehydrocholesterol r... 30 2.8 gnl|UG|Rn.8294 EST204689 Rattus norvegicus cDNA, 3' end /clone=... 30 2.8 >gnl|UG|Rn.3977 EST226397 Rattus norvegicus cDNA, 3' end /clone=REMCK78 /clone_end=3' /gb=AI229702 /gi=3813589 /len=542 Length = 542 Score = 32.2 bits (16), Expect = 0.70 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 57 ctcctttagtatagtcctgt 76 ||||| |||||||||||||| Sbjct: 534 ctcctatagtatagtcctgt 515 >gnl|UG|Rn.32576 UI-R-A1-dr-h-10-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-A1-dr-h-10-0-UI /clone_end=3' /gb=AA923873 /gi=3071009 /len=495 Length = 495 Score = 32.2 bits (16), Expect = 0.70 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 161 tctttgtttaggtttt 176 |||||||||||||||| Sbjct: 234 tctttgtttaggtttt 219 >gnl|UG|Rn.11051 Rat Munc18-1 mRNA, complete cds /cds=(287,2071) /gb=L26087 /gi=1785857 /len=3226 Length = 3226 Score = 30.2 bits (15), Expect = 2.8 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 163 tttgtttaggttttc 177 ||||||||||||||| Sbjct: 1562 tttgtttaggttttc 1548 >gnl|UG|Rn.228 Rattus norvegicus mRNA for 7-dehydrocholesterol reductase, complete cds /cds=(136,1551) /gb=AB016800 /gi=3868992 /len=2427 Length = 2427 Score = 30.2 bits (15), Expect = 2.8 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 160 ctctttgtttaggtt 174 ||||||||||||||| Sbjct: 2006 ctctttgtttaggtt 2020 >gnl|UG|Rn.8294 EST204689 Rattus norvegicus cDNA, 3' end /clone=RLUBV65 /clone_end=3' /gb=AI010238 /gi=3224070 /len=738 Length = 738 Score = 30.2 bits (15), Expect = 2.8 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 219 tactgtatgcagaat 233 ||||||||||||||| Sbjct: 309 tactgtatgcagaat 323 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1587 Number of Sequences: 23003 Number of extensions: 1587 Number of successful extensions: 395 Number of sequences better than 10: 8 length of query: 242 length of database: 15818664 effective HSP length: 16 effective length of query: 226 effective length of database: 15450616 effective search space: 3491839216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)