BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 706e12 (487 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.25736 Rat isoprenylated 67 kDa protein mRNA, complete... 70 7e-12 gnl|UG|Rn.3646 Rat mRNA for dimethylglycine dehydrogenase (EC n... 34 0.37 gnl|UG|Rn.3527 UI-R-C0-ha-a-02-0-UI.s1 Rattus norvegicus cDNA, ... 34 0.37 gnl|UG|Rn.7777 EST200200 Rattus norvegicus cDNA, 3' end /clone=... 34 0.37 gnl|UG|Rn.1711 EST189951 Rattus norvegicus cDNA, 5' end /clone=... 34 0.37 >gnl|UG|Rn.25736 Rat isoprenylated 67 kDa protein mRNA, complete cds /cds=(172,1947) /gb=M80367 /gi=207604 /len=2396 Length = 2396 Score = 69.9 bits (35), Expect = 7e-12 Identities = 35/35 (100%), Positives = 35/35 (100%) Query: 434 accaagggcatctggatgtggtgtgtgcctcaccc 468 ||||||||||||||||||||||||||||||||||| Sbjct: 401 accaagggcatctggatgtggtgtgtgcctcaccc 435 >gnl|UG|Rn.3646 Rat mRNA for dimethylglycine dehydrogenase (EC number 1.5.99.2) /cds=(0,2573) /gb=X55995 /gi=56688 /len=2574 Length = 2574 Score = 34.2 bits (17), Expect = 0.37 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 62 ttcaaagccttcacttc 78 ||||||||||||||||| Sbjct: 833 ttcaaagccttcacttc 817 >gnl|UG|Rn.3527 UI-R-C0-ha-a-02-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-ha-a-02-0-UI /clone_end=3' /gb=AI137572 /gi=3638349 /len=522 Length = 522 Score = 34.2 bits (17), Expect = 0.37 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 14 ctattcttgtcagtctt 30 ||||||||||||||||| Sbjct: 79 ctattcttgtcagtctt 63 >gnl|UG|Rn.7777 EST200200 Rattus norvegicus cDNA, 3' end /clone=REMAO01 /clone_end=3' /gb=AA944701 /gi=3104617 /len=423 Length = 423 Score = 34.2 bits (17), Expect = 0.37 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 413 ggatgcacagtttagtctgaa 433 ||||||||||| ||||||||| Sbjct: 337 ggatgcacagtatagtctgaa 317 >gnl|UG|Rn.1711 EST189951 Rattus norvegicus cDNA, 5' end /clone=RLIAA68 /clone_end=5' /gb=AA800454 /gi=2863409 /len=720 Length = 720 Score = 34.2 bits (17), Expect = 0.37 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 379 ttttttcctcttcttcc 395 ||||||||||||||||| Sbjct: 510 ttttttcctcttcttcc 526 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5059 Number of Sequences: 23003 Number of extensions: 5059 Number of successful extensions: 1499 Number of sequences better than 10: 21 length of query: 487 length of database: 15818664 effective HSP length: 17 effective length of query: 470 effective length of database: 15427613 effective search space: 7250978110 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)