BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 338d11 (471 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.7095 D85801 Rattus norvegicus cDNA /gb=D85801 /gi=146... 127 3e-29 gnl|UG|Rn.24865 UI-R-E1-fd-g-06-0-UI.s1 Rattus norvegicus cDNA,... 68 3e-11 gnl|UG|Rn.16126 UI-R-C1-js-f-06-0-UI.s1 Rattus norvegicus cDNA,... 60 6e-09 gnl|UG|Rn.24540 EST227665 Rattus norvegicus cDNA, 3' end /clone... 44 4e-04 gnl|UG|Rn.27832 UI-R-BT0-pt-g-08-0-UI.s1 Rattus norvegicus cDNA... 38 0.023 >gnl|UG|Rn.7095 D85801 Rattus norvegicus cDNA /gb=D85801 /gi=1469815 /len=430 Length = 430 Score = 127 bits (64), Expect = 3e-29 Identities = 117/135 (86%), Positives = 117/135 (86%) Query: 5 gctgatgcgtgtagaaccgacacacctggaccacacctgggtggtggtcaatttacttct 64 |||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| || || Sbjct: 179 gctgatgcatgtgaaaccgacacacctgggccacacctgggcagtggtcaatttgctcct 238 Query: 65 gccttttgcttcctcagcctttatccttgagatttaggctggtcttctcggatttctccc 124 ||||||| | ||| |||||| ||||||||||||||||| |||||| |||||||||| | Sbjct: 239 accttttgtnttctcggcctttgtccttgagatttaggctagtcttcccggatttctcac 298 Query: 125 taattaattcgggtc 139 |||||||||| |||| Sbjct: 299 taattaattcaggtc 313 Score = 48.1 bits (24), Expect = 2e-05 Identities = 27/28 (96%), Positives = 27/28 (96%) Query: 162 tgggtgtataagtggtgaataaagctac 189 ||||| |||||||||||||||||||||| Sbjct: 394 tgggtatataagtggtgaataaagctac 421 >gnl|UG|Rn.24865 UI-R-E1-fd-g-06-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E1-fd-g-06-0-UI /clone_end=3' /gb=AA955831 /gi=3119526 /len=286 Length = 286 Score = 67.9 bits (34), Expect = 3e-11 Identities = 37/38 (97%), Positives = 37/38 (97%) Query: 162 tgggtgtataagtggtgaataaagctacaggagattct 199 ||||| |||||||||||||||||||||||||||||||| Sbjct: 158 tgggtatataagtggtgaataaagctacaggagattct 121 Score = 60.0 bits (30), Expect = 6e-09 Identities = 30/30 (100%), Positives = 30/30 (100%) Query: 271 ctctcttcctctcctggcttgacacgataa 300 |||||||||||||||||||||||||||||| Sbjct: 45 ctctcttcctctcctggcttgacacgataa 16 Score = 52.0 bits (26), Expect = 2e-06 Identities = 32/34 (94%), Positives = 32/34 (94%) Query: 107 tcttctcggatttctccctaattaattcgggtct 140 |||||| ||||||||||||||||||||| ||||| Sbjct: 285 tcttcttggatttctccctaattaattcaggtct 252 >gnl|UG|Rn.16126 UI-R-C1-js-f-06-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C1-js-f-06-0-UI /clone_end=3' /gb=AI044442 /gi=3290793 /len=460 Length = 460 Score = 60.0 bits (30), Expect = 6e-09 Identities = 30/30 (100%), Positives = 30/30 (100%) Query: 271 ctctcttcctctcctggcttgacacgataa 300 |||||||||||||||||||||||||||||| Sbjct: 43 ctctcttcctctcctggcttgacacgataa 14 >gnl|UG|Rn.24540 EST227665 Rattus norvegicus cDNA, 3' end /clone=REMDD67 /clone_end=3' /gb=AI230977 /gi=3814857 /len=379 Length = 379 Score = 44.1 bits (22), Expect = 4e-04 Identities = 25/26 (96%), Positives = 25/26 (96%) Query: 271 ctctcttcctctcctggcttgacacg 296 |||||||||||| ||||||||||||| Sbjct: 26 ctctcttcctcttctggcttgacacg 1 >gnl|UG|Rn.27832 UI-R-BT0-pt-g-08-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-pt-g-08-0-UI /clone_end=3' /gb=AI145171 /gi=3666970 /len=324 Length = 324 Score = 38.2 bits (19), Expect = 0.023 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 275 cttcctctcctggcttgacacga 297 |||||||| |||||||||||||| Sbjct: 39 cttcctcttctggcttgacacga 17 Score = 36.2 bits (18), Expect = 0.090 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 36 cacacctgggtggtggtcaatt 57 |||||||| ||||||||||||| Sbjct: 235 cacacctgagtggtggtcaatt 214 Score = 34.2 bits (17), Expect = 0.36 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 174 tggtgaataaagctacaggag 194 |||||||||||| |||||||| Sbjct: 63 tggtgaataaagttacaggag 43 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3729 Number of Sequences: 23003 Number of extensions: 3729 Number of successful extensions: 992 Number of sequences better than 10: 18 length of query: 471 length of database: 15818664 effective HSP length: 17 effective length of query: 454 effective length of database: 15427613 effective search space: 7004136302 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)