BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 165c02 (218 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.10437 Rat WDNM1 mRNA fragment from nonmetastatic mamm... 70 3e-12 gnl|UG|Rn.16003 UI-R-C1-kd-f-05-0-UI.s1 Rattus norvegicus cDNA,... 44 2e-04 gnl|UG|Rn.30063 Rattus norvegicus methionine synthase (MS) mRNA... 32 0.63 gnl|UG|Rn.11034 Rattus norvegicus polo like kinase (plk) mRNA, ... 30 2.5 >gnl|UG|Rn.10437 Rat WDNM1 mRNA fragment from nonmetastatic mammary adenocarcinoma cells /cds=(43,225) /gb=X13309 /gi=57500 /len=429 Length = 429 Score = 69.9 bits (35), Expect = 3e-12 Identities = 75/87 (86%), Positives = 75/87 (86%), Gaps = 1/87 (1%) Query: 133 gaatgctaaggagagtttattt-tgtacatgaacacattaggaagctgtcaccagtttat 191 |||||||||||||||||||||| || ||| |||||||||||||||||||| || ||| Sbjct: 429 gaatgctaaggagagtttatttgtggacacaaacacattaggaagctgtcatcacagtat 370 Query: 192 agatcttcatcttctacggatgcaatt 218 |||||||| | ||| | |||||||||| Sbjct: 369 agatcttccttttccaaggatgcaatt 343 >gnl|UG|Rn.16003 UI-R-C1-kd-f-05-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C1-kd-f-05-0-UI /clone_end=3' /gb=AI044703 /gi=3291564 /len=138 Length = 138 Score = 44.1 bits (22), Expect = 2e-04 Identities = 22/22 (100%), Positives = 22/22 (100%) Query: 133 gaatgctaaggagagtttattt 154 |||||||||||||||||||||| Sbjct: 18 gaatgctaaggagagtttattt 39 >gnl|UG|Rn.30063 Rattus norvegicus methionine synthase (MS) mRNA, complete cds /cds=(283,4044) /gb=AF034214 /gi=3978142 /len=4478 Length = 4478 Score = 32.2 bits (16), Expect = 0.63 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 1 aattggaagagtcaat 16 |||||||||||||||| Sbjct: 1604 aattggaagagtcaat 1589 >gnl|UG|Rn.11034 Rattus norvegicus polo like kinase (plk) mRNA, complete cds /cds=(94,1905) /gb=U10188 /gi=497993 /len=2226 Length = 2226 Score = 30.2 bits (15), Expect = 2.5 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 149 ttattttgtacatga 163 ||||||||||||||| Sbjct: 2057 ttattttgtacatga 2071 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1504 Number of Sequences: 23003 Number of extensions: 1504 Number of successful extensions: 417 Number of sequences better than 10: 9 length of query: 218 length of database: 15818664 effective HSP length: 16 effective length of query: 202 effective length of database: 15450616 effective search space: 3121024432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 14 (28.2 bits)