BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 150b04 (243 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOW... 96 6e-20 gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone... 74 2e-13 gnl|UG|Rn.14521 Rattus norvegicus olfactory receptor-like prote... 64 2e-10 gnl|UG|Rn.34021 EST223254 Rattus norvegicus cDNA, 3' end /clone... 56 5e-08 gnl|UG|Rn.19365 UI-R-C1-li-g-11-0-UI.s1 Rattus norvegicus cDNA,... 52 8e-07 >gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOWN /gb=X71442 /gi=311509 /len=1050 Length = 1050 Score = 95.6 bits (48), Expect = 6e-20 Identities = 75/83 (90%), Positives = 75/83 (90%), Gaps = 1/83 (1%) Query: 157 agtcntttttaaaaaggggaaacaaaaatattcataagaggggatatggagacaaagttt 216 |||| || ||||||||||||| ||||| |||||||| |||||||||||||||||||| || Sbjct: 400 agtccttcttaaaaaggggaa-caaaactattcataggaggggatatggagacaaaggtt 458 Query: 217 ggagcagagactgaaggaatggc 239 |||||||||| ||||||||||| Sbjct: 459 ggagcagagatcgaaggaatggc 481 Score = 81.8 bits (41), Expect = 9e-16 Identities = 47/49 (95%), Positives = 47/49 (95%) Query: 1 aattcataggcaaatggatggaactagaaaatatcatcctgagtgaggt 49 |||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 215 aatttataggtaaatggatggaactagaaaatatcatcctgagtgaggt 263 >gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone=RPLCA56 /clone_end=3' /gb=AI177487 /gi=3728125 /len=454 Length = 454 Score = 73.8 bits (37), Expect = 2e-13 Identities = 51/56 (91%), Positives = 51/56 (91%) Query: 1 aattcataggcaaatggatggaactagaaaatatcatcctgagtgaggtnacccaa 56 ||||| ||||||||||| ||||||| ||||||||||||||||||||| | |||||| Sbjct: 140 aattcgtaggcaaatggttggaactggaaaatatcatcctgagtgagctaacccaa 195 Score = 30.2 bits (15), Expect = 2.8 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 221 cagagactgaaggaa 235 ||||||||||||||| Sbjct: 381 cagagactgaaggaa 395 >gnl|UG|Rn.14521 Rattus norvegicus olfactory receptor-like protein (SCR D-2) gene, complete cds /cds=(0,965) /gb=AF034898 /gi=3153222 /len=1086 Length = 1086 Score = 63.9 bits (32), Expect = 2e-10 Identities = 37/39 (94%), Positives = 37/39 (94%) Query: 18 atggaactagaaaatatcatcctgagtgaggtnacccaa 56 |||||||| ||||||||||||||||||||||| |||||| Sbjct: 996 atggaactggaaaatatcatcctgagtgaggtaacccaa 1034 >gnl|UG|Rn.34021 EST223254 Rattus norvegicus cDNA, 3' end /clone=RSPCI63 /clone_end=3' /gb=AI179534 /gi=3730172 /len=343 Length = 343 Score = 56.0 bits (28), Expect = 5e-08 Identities = 61/72 (84%), Positives = 61/72 (84%) Query: 168 aaaaggggaaacaaaaatattcataagaggggatatggagacaaagtttggagcagagac 227 |||||||| |||| | ||||||||| || ||| ||| |||||| ||||||||||||| Sbjct: 192 aaaagggggaacagacatattcataggaatcgatttggtgacaaattttggagcagagaa 251 Query: 228 tgaaggaatggc 239 |||||||||||| Sbjct: 252 tgaaggaatggc 263 >gnl|UG|Rn.19365 UI-R-C1-li-g-11-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C1-li-g-11-0-UI /clone_end=3' /gb=AI060111 /gi=3333888 /len=371 Length = 371 Score = 52.0 bits (26), Expect = 8e-07 Identities = 44/49 (89%), Positives = 44/49 (89%), Gaps = 1/49 (2%) Query: 8 aggcaaatggatggaactagaaaatatcatcctgagtgaggtnacccaa 56 ||||||||||||||| || || ||||||||||| |||||||| |||||| Sbjct: 162 aggcaaatggatggatcttgagaatatcatcct-agtgaggtaacccaa 209 Score = 34.2 bits (17), Expect = 0.18 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 181 aaaatattcataagagg 197 ||||||||||||||||| Sbjct: 355 aaaatattcataagagg 371 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1753 Number of Sequences: 23003 Number of extensions: 1753 Number of successful extensions: 463 Number of sequences better than 10: 26 length of query: 243 length of database: 15818664 effective HSP length: 16 effective length of query: 227 effective length of database: 15450616 effective search space: 3507289832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)