BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 133g01 (346 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.29810 EST189891 Rattus norvegicus cDNA, 5' end /clone... 121 1e-27 gnl|UG|Rn.27857 UI-R-BT0-qf-a-02-0-UI.s1 Rattus norvegicus cDNA... 100 5e-21 gnl|UG|Rn.9669 Rattus norvegicus angiotensin/vasopressin recept... 58 2e-08 gnl|UG|Rn.29906 EST222660 Rattus norvegicus cDNA, 3' end /clone... 54 3e-07 gnl|UG|Rn.27182 UI-R-C2p-ob-b-06-0-UI.s1 Rattus norvegicus cDNA... 50 4e-06 >gnl|UG|Rn.29810 EST189891 Rattus norvegicus cDNA, 5' end /clone=RLIAA37 /clone_end=5' /gb=AA800394 /gi=2863349 /len=660 Length = 660 Score = 121 bits (61), Expect = 1e-27 Identities = 88/97 (90%), Positives = 88/97 (90%) Query: 182 ctctctaaatcttttctcccacccatctttcctgtttgtccagtgacaggcctcattcta 241 ||||||||| ||||||| ||||||||| ||||| ||||||| ||||||||||||||||| Sbjct: 212 ctctctaaaacttttcttccacccatccttccttcttgtccaatgacaggcctcattcta 271 Query: 242 tcttgtacctgccttcacctgtgtaatgacatcatcc 278 || | ||||||||||||||||| |||||||||||||| Sbjct: 272 tcctatacctgccttcacctgtataatgacatcatcc 308 Score = 40.1 bits (20), Expect = 0.004 Identities = 51/59 (86%), Positives = 51/59 (86%), Gaps = 3/59 (5%) Query: 115 ttcataacaacctgtaaa--tacagagtggaatcttaacatcagcctccatgttgtctc 171 ||||||||||||| |||| | ||||| |||||||| ||||| ||||||||||| |||| Sbjct: 115 ttcataacaacctataaatgtgcagagaggaatctt-acatctgcctccatgttctctc 172 >gnl|UG|Rn.27857 UI-R-BT0-qf-a-02-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-qf-a-02-0-UI /clone_end=3' /gb=AI145226 /gi=3667025 /len=437 Length = 437 Score = 99.6 bits (50), Expect = 5e-21 Identities = 83/94 (88%), Positives = 83/94 (88%) Query: 182 ctctctaaatcttttctcccacccatctttcctgtttgtccagtgacaggcctcattcta 241 |||| |||| |||||||||| |||||| ||||| ||||||| ||||||| ||||||||| Sbjct: 135 ctctgtaaaacttttctcccgcccatccttccttcttgtccaatgacaggtctcattcta 76 Query: 242 tcttgtacctgccttcacctgtgtaatgacatca 275 || |||||||||||||||||| ||||||||||| Sbjct: 75 tcctgtacctgccttcacctgcataatgacatca 42 Score = 69.9 bits (35), Expect = 5e-12 Identities = 47/51 (92%), Positives = 47/51 (92%) Query: 225 tgacaggcctcattctatcttgtacctgccttcacctgtgtaatgacatca 275 ||||||| ||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 437 tgacaggtctcattctatcctgtacctgccttcacctgcataatgacatca 387 >gnl|UG|Rn.9669 Rattus norvegicus angiotensin/vasopressin receptor (AII/AVP) mRNA, complete cds /cds=UNKNOWN /gb=M85183 /gi=202805 /len=2257 Length = 2257 Score = 58.0 bits (29), Expect = 2e-08 Identities = 53/61 (86%), Positives = 53/61 (86%) Query: 194 tttctcccacccatctttcctgtttgtccagtgacaggcctcattctatcttgtacctgc 253 ||||||||||||||| || || | |||| ||||||||||| ||||||||||||||||| Sbjct: 2067 tttctcccacccatcctttcttctcatccaatgacaggcctccttctatcttgtacctgc 2008 Query: 254 c 254 | Sbjct: 2007 c 2007 Score = 38.2 bits (19), Expect = 0.017 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 140 tggaatcttaacatcagcctcca 162 |||||||||||||||||| |||| Sbjct: 2172 tggaatcttaacatcagcttcca 2150 >gnl|UG|Rn.29906 EST222660 Rattus norvegicus cDNA, 3' end /clone=RSPBT95 /clone_end=3' /gb=AI178978 /gi=3729616 /len=620 Length = 620 Score = 54.0 bits (27), Expect = 3e-07 Identities = 51/59 (86%), Positives = 51/59 (86%) Query: 196 tctcccacccatctttcctgtttgtccagtgacaggcctcattctatcttgtacctgcc 254 ||||||||||||| ||||| | |||| ||||||||||| ||||||| |||||||||| Sbjct: 204 tctcccacccatccttccttctcctccaatgacaggcctccttctatcctgtacctgcc 262 Score = 38.2 bits (19), Expect = 0.017 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 118 ataacaacctgtaaataca 136 ||||||||||||||||||| Sbjct: 76 ataacaacctgtaaataca 94 >gnl|UG|Rn.27182 UI-R-C2p-ob-b-06-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C2p-ob-b-06-0-UI /clone_end=3' /gb=AI136594 /gi=3637371 /len=328 Length = 328 Score = 50.1 bits (25), Expect = 4e-06 Identities = 34/37 (91%), Positives = 34/37 (91%) Query: 134 acagagtggaatcttaacatcagcctccatgttgtct 170 ||||||| |||||||||||||| | |||||||||||| Sbjct: 98 acagagtagaatcttaacatcaccttccatgttgtct 134 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3094 Number of Sequences: 23003 Number of extensions: 3094 Number of successful extensions: 886 Number of sequences better than 10: 28 length of query: 346 length of database: 15818664 effective HSP length: 16 effective length of query: 330 effective length of database: 15450616 effective search space: 5098703280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)