BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 130b08 (185 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.10347 R.norvegicus cpg1 mRNA /cds=(839,1123) /gb=X732... 117 1e-26 gnl|UG|Rn.27789 UI-R-BT0-pt-e-02-0-UI.s1 Rattus norvegicus cDNA... 32 0.53 gnl|UG|Rn.9892 Rattus norvegicus orexin receptor-1 mRNA, comple... 32 0.53 gnl|UG|Rn.109 EST199911 Rattus norvegicus cDNA, 3' end /clone=R... 30 2.1 gnl|UG|Rn.6924 Rattus norvegicus mint 3 (mint 3) mRNA, complete... 30 2.1 >gnl|UG|Rn.10347 R.norvegicus cpg1 mRNA /cds=(839,1123) /gb=X73292 /gi=313805 /len=4207 Length = 4207 Score = 117 bits (59), Expect = 1e-26 Identities = 68/71 (95%), Positives = 68/71 (95%) Query: 1 gatcaacctgagcttagagtgctacagagggcagagctggagaagtgactccagcccttt 60 |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct: 3428 gatcaacctgagcttagagtgctacagagggcagagctagagaagtgatgccagcccttt 3487 Query: 61 ggaggagccca 71 ||||||||||| Sbjct: 3488 ggaggagccca 3498 >gnl|UG|Rn.27789 UI-R-BT0-pt-e-02-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-pt-e-02-0-UI /clone_end=3' /gb=AI145066 /gi=3666865 /len=488 Length = 488 Score = 32.2 bits (16), Expect = 0.53 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 23 tacagagggcagagct 38 |||||||||||||||| Sbjct: 236 tacagagggcagagct 251 >gnl|UG|Rn.9892 Rattus norvegicus orexin receptor-1 mRNA, complete cds /cds=(565,1815) /gb=AF041244 /gi=2897125 /len=2454 Length = 2454 Score = 32.2 bits (16), Expect = 0.53 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 28 agggcagagctggaga 43 |||||||||||||||| Sbjct: 293 agggcagagctggaga 278 >gnl|UG|Rn.109 EST199911 Rattus norvegicus cDNA, 3' end /clone=REMAG78 /clone_end=3' /gb=AA944412 /gi=3104328 /len=548 Length = 548 Score = 30.2 bits (15), Expect = 2.1 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 23 tacagagggcagagc 37 ||||||||||||||| Sbjct: 37 tacagagggcagagc 51 >gnl|UG|Rn.6924 Rattus norvegicus mint 3 (mint 3) mRNA, complete cds /cds=(84,1793) /gb=AF029109 /gi=3169806 /len=1939 Length = 1939 Score = 30.2 bits (15), Expect = 2.1 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 59 ttggaggagcccaaa 73 ||||||||||||||| Sbjct: 136 ttggaggagcccaaa 150 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1473 Number of Sequences: 23003 Number of extensions: 1473 Number of successful extensions: 457 Number of sequences better than 10: 11 length of query: 185 length of database: 15818664 effective HSP length: 16 effective length of query: 169 effective length of database: 15450616 effective search space: 2611154104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 14 (28.2 bits)