BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 103d10 (370 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.4042 Rat S6 protein kinase mRNA, complete cds /cds=(2... 96 9e-20 gnl|UG|Rn.28165 EST211720 Rattus norvegicus cDNA, 3' end /clone... 42 0.001 gnl|UG|Rn.11315 Rat genes for vasopressin, oxytocin and a long ... 40 0.005 gnl|UG|Rn.21797 UI-R-C2-nn-f-01-0-UI.s1 Rattus norvegicus cDNA,... 40 0.005 gnl|UG|Rn.14516 Rattus norvegicus mRNA for inward rectifier pot... 40 0.005 >gnl|UG|Rn.4042 Rat S6 protein kinase mRNA, complete cds /cds=(21,1598) /gb=M58340 /gi=206841 /len=2287 Length = 2287 Score = 95.6 bits (48), Expect = 9e-20 Identities = 48/48 (100%), Positives = 48/48 (100%) Query: 1 aatttgcctccctacctcacacaagaagctcgagatctgcttaaaaag 48 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 952 aatttgcctccctacctcacacaagaagctcgagatctgcttaaaaag 999 >gnl|UG|Rn.28165 EST211720 Rattus norvegicus cDNA, 3' end /clone=RBRCD43 /clone_end=3' /gb=AI102431 /gi=3707204 /len=448 Length = 448 Score = 42.1 bits (21), Expect = 0.001 Identities = 42/49 (85%), Positives = 42/49 (85%) Query: 289 aaagatctgcctgtttgtgcctcctgagtcctggggttaaaagtgtgca 337 ||||| ||||| ||| |||||||||||| ||||| ||||| ||||||| Sbjct: 288 aaagacctgcccttttctgcctcctgagtgctgggattaaaggtgtgca 240 >gnl|UG|Rn.11315 Rat genes for vasopressin, oxytocin and a long interspersed repeated DNA element (LINE) /cds=(2530,2907) /gb=X59496 /gi=460830 /len=2908 Length = 2908 Score = 40.1 bits (20), Expect = 0.005 Identities = 29/32 (90%), Positives = 29/32 (90%) Query: 306 tgcctcctgagtcctggggttaaaagtgtgca 337 |||||||||||| ||||| |||||||| |||| Sbjct: 1078 tgcctcctgagttctgggattaaaagtttgca 1109 >gnl|UG|Rn.21797 UI-R-C2-nn-f-01-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C2-nn-f-01-0-UI /clone_end=3' /gb=AI072624 /gi=3398818 /len=379 Length = 379 Score = 40.1 bits (20), Expect = 0.005 Identities = 29/32 (90%), Positives = 29/32 (90%) Query: 306 tgcctcctgagtcctggggttaaaagtgtgca 337 |||||||||||| |||||||| || ||||||| Sbjct: 96 tgcctcctgagtgctggggttgaaggtgtgca 65 >gnl|UG|Rn.14516 Rattus norvegicus mRNA for inward rectifier potassium channel Kir 1.4, complete cds /cds=(125,1207) /gb=AB013890 /gi=3138790 /len=2018 Length = 2018 Score = 40.1 bits (20), Expect = 0.005 Identities = 23/24 (95%), Positives = 23/24 (95%) Query: 278 ctcaaactcataaagatctgcctg 301 |||||||||| ||||||||||||| Sbjct: 1745 ctcaaactcacaaagatctgcctg 1722 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3123 Number of Sequences: 23003 Number of extensions: 3123 Number of successful extensions: 1205 Number of sequences better than 10: 67 length of query: 370 length of database: 15818664 effective HSP length: 16 effective length of query: 354 effective length of database: 15450616 effective search space: 5469518064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)