BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 090h09 (247 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.13145 UI-R-BT0-pt-b-11-0-UI.s1 Rattus norvegicus cDNA... 40 0.003 gnl|UG|Rn.28606 UI-R-BT0-py-d-09-0-UI.s1 Rattus norvegicus cDNA... 38 0.012 gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel AS... 38 0.012 gnl|UG|Rn.1467 EST217318 Rattus norvegicus cDNA, 3' end /clone=... 38 0.012 gnl|UG|Rn.33225 EST206462 Rattus norvegicus cDNA, 3' end /clone... 34 0.18 >gnl|UG|Rn.13145 UI-R-BT0-pt-b-11-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-pt-b-11-0-UI /clone_end=3' /gb=AI145151 /gi=3666950 /len=473 Length = 473 Score = 40.1 bits (20), Expect = 0.003 Identities = 29/32 (90%), Positives = 29/32 (90%) Query: 85 tttaaatatttattttattttaacttatgtat 116 ||||||||||||||||| ||| | |||||||| Sbjct: 28 tttaaatatttattttagttttaattatgtat 59 >gnl|UG|Rn.28606 UI-R-BT0-py-d-09-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-py-d-09-0-UI /clone_end=3' /gb=AI145762 /gi=3667561 /len=460 Length = 460 Score = 38.2 bits (19), Expect = 0.012 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 84 ttttaaatatttattttat 102 ||||||||||||||||||| Sbjct: 384 ttttaaatatttattttat 402 >gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel ASIC1 mRNA, complete cds /cds=(122,1702) /gb=U94403 /gi=2039365 /len=3488 Length = 3488 Score = 38.2 bits (19), Expect = 0.012 Identities = 50/59 (84%), Positives = 50/59 (84%), Gaps = 1/59 (1%) Query: 177 agatctttccatcttctgaggtcttcttcaatttccttcttcagtgtcttgaagttctt 235 ||||||||| |||| |||| ||| ||||| |||| |||||||| | |||||||||||| Sbjct: 2141 agatctttctatct-ctgaaatctacttcagtttctttcttcagagacttgaagttctt 2198 >gnl|UG|Rn.1467 EST217318 Rattus norvegicus cDNA, 3' end /clone=RMUBJ72 /clone_end=3' /gb=AI171362 /gi=3711402 /len=644 Length = 644 Score = 38.2 bits (19), Expect = 0.012 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 84 ttttaaatatttattttatttta 106 ||||||| ||||||||||||||| Sbjct: 21 ttttaaagatttattttatttta 43 >gnl|UG|Rn.33225 EST206462 Rattus norvegicus cDNA, 3' end /clone=RPLAR58 /clone_end=3' /gb=AI012011 /gi=3225843 /len=491 Length = 491 Score = 34.2 bits (17), Expect = 0.18 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 88 aaatatttattttattt 104 ||||||||||||||||| Sbjct: 1 aaatatttattttattt 17 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3305 Number of Sequences: 23003 Number of extensions: 3305 Number of successful extensions: 1134 Number of sequences better than 10: 56 length of query: 247 length of database: 15818664 effective HSP length: 16 effective length of query: 231 effective length of database: 15450616 effective search space: 3569092296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)