BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 065e02 (348 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.3181 Rat mRNA, complete cds /cds=(259,1227) /gb=M6913... 32 1.0 gnl|UG|Rn.10502 Rattus norvegicus RASP1 mRNA, complete cds /cds... 32 1.0 gnl|UG|Rn.8130 EST195886 Rattus norvegicus cDNA, 3' end /clone=... 32 1.0 gnl|UG|Rn.22703 EST195538 Rattus norvegicus cDNA, 3' end /clone... 30 4.1 >gnl|UG|Rn.3181 Rat mRNA, complete cds /cds=(259,1227) /gb=M69138 /gi=203397 /len=1564 Length = 1564 Score = 32.2 bits (16), Expect = 1.0 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 110 tttcttattgctggaa 125 |||||||||||||||| Sbjct: 1309 tttcttattgctggaa 1294 >gnl|UG|Rn.10502 Rattus norvegicus RASP1 mRNA, complete cds /cds=(39,1349) /gb=U55765 /gi=1397240 /len=1511 Length = 1511 Score = 32.2 bits (16), Expect = 1.0 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 110 tttcttattgctggaaaagg 129 |||||| ||||||||||||| Sbjct: 486 tttcttgttgctggaaaagg 467 >gnl|UG|Rn.8130 EST195886 Rattus norvegicus cDNA, 3' end /clone=RKIAM16 /clone_end=3' /gb=AA892083 /gi=3018962 /len=489 Length = 489 Score = 32.2 bits (16), Expect = 1.0 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 94 tgggaaagcaccctct 109 |||||||||||||||| Sbjct: 332 tgggaaagcaccctct 317 >gnl|UG|Rn.22703 EST195538 Rattus norvegicus cDNA, 3' end /clone=RKIAG14 /clone_end=3' /gb=AA891735 /gi=3018614 /len=516 Length = 516 Score = 30.2 bits (15), Expect = 4.1 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 332 ccctgccccctttta 346 ||||||||||||||| Sbjct: 23 ccctgccccctttta 9 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1854 Number of Sequences: 23003 Number of extensions: 1854 Number of successful extensions: 516 Number of sequences better than 10: 16 length of query: 348 length of database: 15818664 effective HSP length: 16 effective length of query: 332 effective length of database: 15450616 effective search space: 5129604512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)