BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 052g11 (668 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.24854 EST188954 Rattus norvegicus cDNA, 3' end /clone... 299 6e-81 gnl|UG|Rn.15261 UI-R-A1-du-f-11-0-UI.s1 Rattus norvegicus cDNA,... 34 0.51 gnl|UG|Rn.33199 EST204699 Rattus norvegicus cDNA, 3' end /clone... 32 2.0 gnl|UG|Rn.23980 EST216262 Rattus norvegicus cDNA, 3' end /clone... 32 2.0 gnl|UG|Rn.6824 EST194592 Rattus norvegicus cDNA, 3' end /clone=... 32 2.0 >gnl|UG|Rn.24854 EST188954 Rattus norvegicus cDNA, 3' end /clone=RHEAB27 /clone_end=3' /gb=AA799457 /gi=2862412 /len=668 Length = 668 Score = 299 bits (151), Expect = 6e-81 Identities = 197/209 (94%), Positives = 197/209 (94%), Gaps = 4/209 (1%) Query: 102 ctgtccaggcacacacagactcacacacttgcaagcagagctcctgatgtcagggctcta 161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 368 ctgtccaggcacacacagactcacacacttgcaagcagagctcctgatgtcagggctcta 427 Query: 162 cct-gaggcttggctaccaacttcagaatcaaggtgtctgcttgtctccctggcagactg 220 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 428 cctngaggcttggcta-caacttcagaatcaaggtgtctgcttgtctccctggcagactg 486 Query: 221 gtaaggccaccgtgcaagcanatgtttanc-agctcgaggccccancaggggaatggcct 279 |||| | ||||||||||||| ||||||| | ||||||||| |||| |||||||||||||| Sbjct: 487 gtaanggcaccgtgcaagcagatgtttagcaagctcgagg-cccaacaggggaatggcct 545 Query: 280 gccanacactgtgggtgtgaaggaaagtt 308 || | ||||||||||||||| |||||||| Sbjct: 546 gcnagacactgtgggtgtgagggaaagtt 574 Score = 105 bits (53), Expect = 2e-22 Identities = 53/53 (100%), Positives = 53/53 (100%) Query: 1 gatcaccaacaggctccttcctcagcatcttcaggttagaacagcctgcccta 53 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 gatcaccaacaggctccttcctcagcatcttcaggttagaacagcctgcccta 313 >gnl|UG|Rn.15261 UI-R-A1-du-f-11-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-A1-du-f-11-0-UI /clone_end=3' /gb=AA924078 /gi=3071214 /len=493 Length = 493 Score = 34.2 bits (17), Expect = 0.51 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 140 agctcctgatgtcaggg 156 ||||||||||||||||| Sbjct: 390 agctcctgatgtcaggg 374 >gnl|UG|Rn.33199 EST204699 Rattus norvegicus cDNA, 3' end /clone=RLUBV79 /clone_end=3' /gb=AI010248 /gi=3224080 /len=606 Length = 606 Score = 32.2 bits (16), Expect = 2.0 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 110 gcacacacagactcacacac 129 |||||||||||| ||||||| Sbjct: 420 gcacacacagacacacacac 401 >gnl|UG|Rn.23980 EST216262 Rattus norvegicus cDNA, 3' end /clone=RLUCH10 /clone_end=3' /gb=AI170336 /gi=3710376 /len=229 Length = 229 Score = 32.2 bits (16), Expect = 2.0 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 12 ggctccttcctcagca 27 |||||||||||||||| Sbjct: 183 ggctccttcctcagca 168 >gnl|UG|Rn.6824 EST194592 Rattus norvegicus cDNA, 3' end /clone=RSPAN18 /clone_end=3' /gb=AA851824 /gi=2939364 /len=445 Length = 445 Score = 32.2 bits (16), Expect = 2.0 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 525 ctccttttttccctct 540 |||||||||||||||| Sbjct: 147 ctccttttttccctct 132 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3391 Number of Sequences: 23003 Number of extensions: 3391 Number of successful extensions: 310 Number of sequences better than 10: 12 length of query: 668 length of database: 15818664 effective HSP length: 17 effective length of query: 651 effective length of database: 15427613 effective search space: 10043376063 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)