BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 02393 (505 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOW... 174 2e-43 gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone... 155 2e-37 gnl|UG|Rn.23242 UI-R-C0-gr-h-08-0-UI.s1 Rattus norvegicus cDNA,... 80 7e-15 gnl|UG|Rn.15647 UI-R-A1-el-d-05-0-UI.s1 Rattus norvegicus cDNA,... 76 1e-13 gnl|UG|Rn.29314 EST223296 Rattus norvegicus cDNA, 3' end /clone... 62 2e-09 >gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOWN /gb=X71442 /gi=311509 /len=1050 Length = 1050 Score = 141 bits (71), Expect = 2e-33 Identities = 125/143 (87%), Positives = 125/143 (87%) Query: 10 ttgtctccatatttcctcctgtgaatatttttgttcccccttctaagaaggactgaagca 69 |||||||||||| |||||| |||||| ||||||||||| || ||||||||||| ||||| Sbjct: 453 ttgtctccatatcccctcctatgaatagttttgttcccctttttaagaaggactaaagca 394 Query: 70 acctcactttggtcatccttcttctggagtttcatgtggtctgtgagttgtatcttgggt 129 || |||||||||||||||||||| || |||||||||| |||| |||||||||||||| Sbjct: 393 tccgtactttggtcatccttcttcttgaacttcatgtggtgtgtgggttgtatcttgggt 334 Query: 130 aatccgagattttgggctaatat 152 ||| ||| |||||||||||||| Sbjct: 333 aatttgagcttttgggctaatat 311 Score = 174 bits (88), Expect = 2e-43 Identities = 220/262 (83%), Positives = 220/262 (83%), Gaps = 4/262 (1%) Query: 240 ttgggttacctcactcagggtaatattttctagttccatccatttgcctatgaatttcat 299 |||| |||||||||||||| | ||||||||||||||||||||||| ||||| |||||||| Sbjct: 270 ttggattacctcactcaggatgatattttctagttccatccatttacctataaatttcat 211 Query: 300 aatgtcattgtttttgatagctgagtaaaattccattgtgtaaatgtac---tacatttt 356 || ||||||||||||||||||||||| | ||||||||||| |||||| | ||||| Sbjct: 210 gatatcattgtttttgatagctgagtagtactccattgtgtagatgtaccaatggatttt 151 Query: 357 ctatatctattcctatgttgaggaacat-caggttctttccagcttctgacttttataat 415 || |||| ||||| |||||| | ||| |||||||||||||||||| || |||| | Sbjct: 150 ctgtatccattcccctgttgaagggcatatgggttctttccagcttctgtctattatgaa 91 Query: 416 taaggcttctaggaacttagtggagcatgtgtccttgttatatgttggagcatcttttag 475 ||||||| ||| |||| ||||||||||||||| ||||| |||||||||| || ||| | Sbjct: 90 taaggctgctatgaacagagtggagcatgtgtctttgttgtatgttggagtctcatttgg 31 Query: 476 gtatatgaccaggagtggtata 497 ||||||| ||||||| |||||| Sbjct: 30 gtatatgcccaggagaggtata 9 >gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone=RPLCA56 /clone_end=3' /gb=AI177487 /gi=3728125 /len=454 Length = 454 Score = 155 bits (78), Expect = 2e-37 Identities = 123/138 (89%), Positives = 123/138 (89%) Query: 240 ttgggttacctcactcagggtaatattttctagttccatccatttgcctatgaatttcat 299 |||||||| |||||||||| | |||||||| ||||||| ||||||||||| ||||||||| Sbjct: 195 ttgggttagctcactcaggatgatattttccagttccaaccatttgcctacgaatttcat 136 Query: 300 aatgtcattgtttttgatagctgagtaaaattccattgtgtaaatgtactacattttcta 359 || || ||||||||||||||||||||| ||||||||||||| |||||| ||||||||| Sbjct: 135 aaactcgttgtttttgatagctgagtaatattccattgtgtagatgtaccacattttctg 76 Query: 360 tatctattcctatgttga 377 |||| |||||| |||||| Sbjct: 75 tatccattcctctgttga 58 >gnl|UG|Rn.23242 UI-R-C0-gr-h-08-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-gr-h-08-0-UI /clone_end=3' /gb=AA965019 /gi=3138511 /len=503 Length = 503 Score = 79.8 bits (40), Expect = 7e-15 Identities = 63/71 (88%), Positives = 63/71 (88%) Query: 307 ttgtttttgatagctgagtaaaattccattgtgtaaatgtactacattttctatatctat 366 |||||| |||||||||||||| ||||||||||||| || ||| ||||||||| |||| || Sbjct: 477 ttgtttntgatagctgagtaatattccattgtgtagatataccacattttctgtatccat 418 Query: 367 tcctatgttga 377 |||| |||||| Sbjct: 417 tcctctgttga 407 >gnl|UG|Rn.15647 UI-R-A1-el-d-05-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-A1-el-d-05-0-UI /clone_end=3' /gb=AA926061 /gi=3073197 /len=499 Length = 499 Score = 75.8 bits (38), Expect = 1e-13 Identities = 101/122 (82%), Positives = 101/122 (82%) Query: 263 tattttctagttccatccatttgcctatgaatttcataatgtcattgtttttgatagctg 322 ||||||||||| |||| ||||||||| ||| || || | |||||| ||||| ||||||| Sbjct: 193 tattttctagtcccattcatttgcctgagaaatttatgaagtcattttttttaatagctg 134 Query: 323 agtaaaattccattgtgtaaatgtactacattttctatatctattcctatgttgaggaac 382 |||| | |||||||| ||||||||| ||||||||| ||| |||| | |||||||| || Sbjct: 133 agtagtactccattgtttaaatgtaccacattttctgtattcattcttttgttgagggac 74 Query: 383 at 384 || Sbjct: 73 at 72 >gnl|UG|Rn.29314 EST223296 Rattus norvegicus cDNA, 3' end /clone=RSPCJ14 /clone_end=3' /gb=AI179574 /gi=3730212 /len=359 Length = 359 Score = 61.9 bits (31), Expect = 2e-09 Identities = 119/147 (80%), Positives = 119/147 (80%), Gaps = 1/147 (0%) Query: 273 ttccatccatttgcctatgaatttcataatgtcattgtttttgatagctgagtaaaattc 332 |||||||||||| | |||||||||||| || |||| ||| ||||||||||| | Sbjct: 164 ttccatccatttacttatgaatttcatggaatccttgtatttaatagctgagtagctctt 105 Query: 333 cattgtgtaaatgtactacattttctatatctattcctatgttgaggaacatcagg-ttc 391 ||||||| |||||||| || ||||| |||| |||||| || |||| ||||| || ||| Sbjct: 104 cattgtgcaaatgtaccaccttttcagtatccattcctctgctgagacacatctggattc 45 Query: 392 tttccagcttctgacttttataattaa 418 ||||||||||||| || |||||||||| Sbjct: 44 tttccagcttctggctattataattaa 18 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4123 Number of Sequences: 23003 Number of extensions: 4123 Number of successful extensions: 1161 Number of sequences better than 10: 21 length of query: 505 length of database: 15818664 effective HSP length: 17 effective length of query: 488 effective length of database: 15427613 effective search space: 7528675144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)