BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01625 (790 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOW... 125 2e-28 gnl|UG|Rn.34021 EST223254 Rattus norvegicus cDNA, 3' end /clone... 64 7e-10 gnl|UG|Rn.7001 UI-R-E0-cz-g-01-0-UI.s1 Rattus norvegicus cDNA, ... 58 4e-08 gnl|UG|Rn.3550 EST197063 Rattus norvegicus cDNA, 3' end /clone=... 58 4e-08 gnl|UG|Rn.31761 C06749 Rattus norvegicus cDNA /gb=C06749 /gi=15... 48 4e-05 >gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOWN /gb=X71442 /gi=311509 /len=1050 Length = 1050 Score = 125 bits (63), Expect = 2e-28 Identities = 113/129 (87%), Positives = 113/129 (87%), Gaps = 3/129 (2%) Query: 174 aatgaccattccttcagtctctgctccaaacttcattgccatatc---tcctatgaatat 230 |||| |||||||||| |||||||||||| ||| | ||||||| ||||||||||| Sbjct: 485 aatggccattccttcgatctctgctccaacctttgtctccatatcccctcctatgaatag 426 Query: 231 ttttgttcccccttttaagaaggactgaagcatccacactttggtcatccttcttcttga 290 ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 425 ttttgttcccctttttaagaaggactaaagcatccgtactttggtcatccttcttcttga 366 Query: 291 acttcatgt 299 ||||||||| Sbjct: 365 acttcatgt 357 Score = 52.0 bits (26), Expect = 3e-06 Identities = 35/38 (92%), Positives = 35/38 (92%) Query: 110 ttcttggcttcatcaatactatctagttttggtggctg 147 |||||||||||||||||| ||||||| ||| ||||||| Sbjct: 562 ttcttggcttcatcaatattatctaggtttagtggctg 525 >gnl|UG|Rn.34021 EST223254 Rattus norvegicus cDNA, 3' end /clone=RSPCI63 /clone_end=3' /gb=AI179534 /gi=3730172 /len=343 Length = 343 Score = 63.9 bits (32), Expect = 7e-10 Identities = 76/90 (84%), Positives = 76/90 (84%), Gaps = 3/90 (3%) Query: 174 aatgaccattccttcagtctctgctccaaacttcattgccatatc---tcctatgaatat 230 |||| ||||||||||| ||||||||||||| || | ||| ||| |||||||||||| Sbjct: 267 aatggccattccttcattctctgctccaaaatttgtcaccaaatcgattcctatgaatat 208 Query: 231 ttttgttcccccttttaagaaggactgaag 260 | ||||||||||||||||| ||||||||| Sbjct: 207 gtctgttcccccttttaagatggactgaag 178 >gnl|UG|Rn.7001 UI-R-E0-cz-g-01-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-cz-g-01-0-UI /clone_end=3' /gb=AA899248 /gi=3034602 /len=447 Length = 447 Score = 58.0 bits (29), Expect = 4e-08 Identities = 41/45 (91%), Positives = 41/45 (91%) Query: 7 gttctcagttcaatggtttgctgctagttttcgcctctgtatttg 51 ||||| ||||||||||||||||||||| ||| |||||||||||| Sbjct: 395 gttcttagttcaatggtttgctgctagcattcacctctgtatttg 439 >gnl|UG|Rn.3550 EST197063 Rattus norvegicus cDNA, 3' end /clone=RKIBE21 /clone_end=3' /gb=AA893260 /gi=3020139 /len=514 Length = 514 Score = 58.0 bits (29), Expect = 4e-08 Identities = 44/49 (89%), Positives = 44/49 (89%) Query: 3 tcctgttctcagttcaatggtttgctgctagttttcgcctctgtatttg 51 |||| ||||||||||| |||||||||||| | |||||||||||||||| Sbjct: 350 tcctattctcagttcagtggtttgctgctggcattcgcctctgtatttg 302 >gnl|UG|Rn.31761 C06749 Rattus norvegicus cDNA /gb=C06749 /gi=1503525 /len=489 Length = 489 Score = 48.1 bits (24), Expect = 4e-05 Identities = 39/44 (88%), Positives = 39/44 (88%) Query: 8 ttctcagttcaatggtttgctgctagttttcgcctctgtatttg 51 ||||||||||| |||||||||||| | ||| |||||||||||| Sbjct: 337 ttctcagttcagtggtttgctgctggcattcacctctgtatttg 294 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7509 Number of Sequences: 23003 Number of extensions: 7509 Number of successful extensions: 561 Number of sequences better than 10: 27 length of query: 790 length of database: 15818664 effective HSP length: 17 effective length of query: 773 effective length of database: 15427613 effective search space: 11925544849 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)