BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01458 (404 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.15245 EST229090 Rattus norvegicus cDNA, 3' end /clone... 228 1e-59 gnl|UG|Rn.3752 EST190162 Rattus norvegicus cDNA, 3' end /clone=... 34 0.31 gnl|UG|Rn.11386 Rat leukocyte common antigen-related phosphatas... 34 0.31 gnl|UG|Rn.24268 EST224523 Rattus norvegicus cDNA, 3' end /clone... 30 4.8 >gnl|UG|Rn.15245 EST229090 Rattus norvegicus cDNA, 3' end /clone=RKICB27 /clone_end=3' /gb=AI232402 /gi=3816282 /len=489 Length = 489 Score = 228 bits (115), Expect = 1e-59 Identities = 149/160 (93%), Positives = 149/160 (93%), Gaps = 2/160 (1%) Query: 1 gatccccgtggttggtggttttntccctttataagctctgtgaaa-ttcaggtcggggtc 59 ||||||| ||||| |||||||| ||| |||||||||||||||||| |||||||||||||| Sbjct: 160 gatccccctggtttgtggttttttcc-tttataagctctgtgaaaattcaggtcggggtc 102 Query: 60 gaactcntntactcccngtgtggtgtatgagtctcgaccccagcatgctggcntgagctc 119 |||||| | ||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 101 gaactcctctactccctgtgtggtgtatgagtctcgaccccagcatgctggcctgagctc 42 Query: 120 tcgtttcatctcgcnnacaataaatcttcctcgtgtgatt 159 |||||||||||||| |||||||||||||||||||||||| Sbjct: 41 tcgtttcatctcgctcacaataaatcttcctcgtgtgatt 2 >gnl|UG|Rn.3752 EST190162 Rattus norvegicus cDNA, 3' end /clone=RLUAK06 /clone_end=3' /gb=AA800665 /gi=2863620 /len=721 Length = 721 Score = 34.2 bits (17), Expect = 0.31 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 225 cttcgggggtctttcag 241 ||||||||||||||||| Sbjct: 716 cttcgggggtctttcag 700 >gnl|UG|Rn.11386 Rat leukocyte common antigen-related phosphatase (LAR) mRNA, complete cds /cds=(20,5716) /gb=L11586 /gi=205132 /len=6545 Length = 6545 Score = 34.2 bits (17), Expect = 0.31 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 213 gtggggggctcccttcg 229 ||||||||||||||||| Sbjct: 6032 gtggggggctcccttcg 6016 >gnl|UG|Rn.24268 EST224523 Rattus norvegicus cDNA, 3' end /clone=RBRCM25 /clone_end=3' /gb=AI227828 /gi=3811715 /len=560 Length = 560 Score = 30.2 bits (15), Expect = 4.8 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 88 gagtctcgaccccag 102 ||||||||||||||| Sbjct: 49 gagtctcgaccccag 35 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1801 Number of Sequences: 23003 Number of extensions: 1801 Number of successful extensions: 472 Number of sequences better than 10: 11 length of query: 404 length of database: 15818664 effective HSP length: 16 effective length of query: 388 effective length of database: 15450616 effective search space: 5994839008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)