BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01405 (490 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.1097 EST218300 Rattus norvegicus cDNA, 3' end /clone=... 82 2e-15 gnl|UG|Rn.10047 Rattus norvegicus potassium channel mRNA, compl... 82 2e-15 gnl|UG|Rn.12769 UI-R-C0-hv-c-10-0-UI.s1 Rattus norvegicus cDNA,... 76 1e-13 gnl|UG|Rn.32398 UI-R-E0-dg-f-05-0-UI.s1 Rattus norvegicus cDNA,... 62 2e-09 gnl|UG|Rn.23803 UI-R-BT0-pn-d-03-0-UI.s1 Rattus norvegicus cDNA... 60 6e-09 >gnl|UG|Rn.1097 EST218300 Rattus norvegicus cDNA, 3' end /clone=RMUBX53 /clone_end=3' /gb=AI172299 /gi=3712339 /len=555 Length = 555 Score = 81.8 bits (41), Expect = 2e-15 Identities = 50/53 (94%), Positives = 50/53 (94%) Query: 342 taatacagttcctcgtgttgtggtgaccccaaccataaaattattttcgttgc 394 |||| ||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct: 500 taatccagttcctcatgttgtggtgaccccaaccataaaattattttcattgc 552 >gnl|UG|Rn.10047 Rattus norvegicus potassium channel mRNA, complete cds /cds=(181,1440) /gb=L35771 /gi=532223 /len=3156 Length = 3156 Score = 81.8 bits (41), Expect = 2e-15 Identities = 71/81 (87%), Positives = 71/81 (87%) Query: 308 agtggttctcagtttttctaatgctgagaccctttaatacagttcctcgtgttgtggtga 367 ||||||||||| || ||||||||| |||| ||||||| |||||||| ||||||| ||| Sbjct: 3069 agtggttctcaaccttcctaatgctgtgaccttttaatatagttcctcatgttgtgatga 3128 Query: 368 ccccaaccataaaattatttt 388 |||||| |||||||||||||| Sbjct: 3129 ccccaatcataaaattatttt 3149 >gnl|UG|Rn.12769 UI-R-C0-hv-c-10-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-hv-c-10-0-UI /clone_end=3' /gb=AA997784 /gi=3188435 /len=454 Length = 454 Score = 75.8 bits (38), Expect = 1e-13 Identities = 62/70 (88%), Positives = 62/70 (88%) Query: 325 ctaatgctgagaccctttaatacagttcctcgtgttgtggtgaccccaaccataaaatta 384 ||||||||| ||| ||| ||||||||||| | ||||| | |||||||||||||||||||| Sbjct: 268 ctaatgctgggactcttcaatacagttccacatgttgcgatgaccccaaccataaaatta 327 Query: 385 ttttcgttgc 394 ||||| |||| Sbjct: 328 ttttcattgc 337 >gnl|UG|Rn.32398 UI-R-E0-dg-f-05-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-dg-f-05-0-UI /clone_end=3' /gb=AA899630 /gi=3034984 /len=332 Length = 332 Score = 61.9 bits (31), Expect = 2e-09 Identities = 53/61 (86%), Positives = 53/61 (86%), Gaps = 7/61 (11%) Query: 341 ttaatacagttcctcgtgttgtggtga-------ccccaaccataaaattattttcgttg 393 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 92 ttaatacagttcctcatgttgtggtgacccccatccccaaccataaaattattttcgttg 33 Query: 394 c 394 | Sbjct: 32 c 32 >gnl|UG|Rn.23803 UI-R-BT0-pn-d-03-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-pn-d-03-0-UI /clone_end=3' /gb=AI144587 /gi=3666386 /len=572 Length = 572 Score = 60.0 bits (30), Expect = 6e-09 Identities = 39/42 (92%), Positives = 39/42 (92%) Query: 326 taatgctgagaccctttaatacagttcctcgtgttgtggtga 367 |||||||| ||||||||||||||||||| |||||||||||| Sbjct: 214 taatgctgctaccctttaatacagttccttgtgttgtggtga 173 Score = 38.2 bits (19), Expect = 0.024 Identities = 25/27 (92%), Positives = 25/27 (92%) Query: 417 tgttataaatcatattgtaaatatctg 443 |||||| ||||||| |||||||||||| Sbjct: 127 tgttatgaatcataatgtaaatatctg 101 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4964 Number of Sequences: 23003 Number of extensions: 4964 Number of successful extensions: 1386 Number of sequences better than 10: 50 length of query: 490 length of database: 15818664 effective HSP length: 17 effective length of query: 473 effective length of database: 15427613 effective search space: 7297260949 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)