BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01055 (585 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.18205 UI-R-C0-ix-g-04-0-UI.s1 Rattus norvegicus cDNA,... 52 2e-06 gnl|UG|Rn.29998 Rattus norvegicus synaptic scaffolding molecule... 38 0.029 gnl|UG|Rn.19514 UI-R-E1-gp-f-10-0-UI.s1 Rattus norvegicus cDNA,... 38 0.029 gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel AS... 36 0.11 gnl|UG|Rn.27775 UI-R-BT0-pr-f-08-0-UI.s1 Rattus norvegicus cDNA... 34 0.45 >gnl|UG|Rn.18205 UI-R-C0-ix-g-04-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-ix-g-04-0-UI /clone_end=3' /gb=AI029337 /gi=3247163 /len=448 Length = 448 Score = 52.0 bits (26), Expect = 2e-06 Identities = 45/50 (90%), Positives = 45/50 (90%), Gaps = 1/50 (2%) Query: 411 ctgtttaaaagaaatgcagggacagaaatgggagcagagactgaaggaaa 460 |||| ||||| ||||||||||||| |||| | |||||||||||||||||| Sbjct: 369 ctgtctaaaacaaatgcagggacaaaaatag-agcagagactgaaggaaa 417 >gnl|UG|Rn.29998 Rattus norvegicus synaptic scaffolding molecule (S-SCAM) mRNA, complete cds /cds=(150,3983) /gb=AF034863 /gi=3411052 /len=4767 Length = 4767 Score = 38.2 bits (19), Expect = 0.029 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 25 cctccagttgaaccagcaccatt 47 ||||||| ||||||||||||||| Sbjct: 712 cctccagctgaaccagcaccatt 734 >gnl|UG|Rn.19514 UI-R-E1-gp-f-10-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E1-gp-f-10-0-UI /clone_end=3' /gb=AI113029 /gi=3512978 /len=518 Length = 518 Score = 38.2 bits (19), Expect = 0.029 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 405 ttttttctgtttaaaagaa 423 ||||||||||||||||||| Sbjct: 10 ttttttctgtttaaaagaa 28 >gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel ASIC1 mRNA, complete cds /cds=(122,1702) /gb=U94403 /gi=2039365 /len=3488 Length = 3488 Score = 36.2 bits (18), Expect = 0.11 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 204 ttgctctgtaatactgcttgag 225 ||||||||||||| |||||||| Sbjct: 1903 ttgctctgtaatattgcttgag 1924 >gnl|UG|Rn.27775 UI-R-BT0-pr-f-08-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-pr-f-08-0-UI /clone_end=3' /gb=AI145025 /gi=3666824 /len=526 Length = 526 Score = 34.2 bits (17), Expect = 0.45 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 178 ccaataccatgcagttt 194 ||||||||||||||||| Sbjct: 413 ccaataccatgcagttt 397 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5552 Number of Sequences: 23003 Number of extensions: 5552 Number of successful extensions: 434 Number of sequences better than 10: 16 length of query: 585 length of database: 15818664 effective HSP length: 17 effective length of query: 568 effective length of database: 15427613 effective search space: 8762884184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)