BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 00802 (318 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel AS... 125 8e-29 gnl|UG|Rn.27775 UI-R-BT0-pr-f-08-0-UI.s1 Rattus norvegicus cDNA... 36 0.060 gnl|UG|Rn.24113 EST219917 Rattus norvegicus cDNA, 3' end /clone... 32 0.94 gnl|UG|Rn.2862 Rattus norvegicus calpain-like protease (Capa6) ... 32 0.94 gnl|UG|Rn.6150 Rat DNA for lanosterol 14-demethylase /cds=(126,... 32 0.94 >gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel ASIC1 mRNA, complete cds /cds=(122,1702) /gb=U94403 /gi=2039365 /len=3488 Length = 3488 Score = 125 bits (63), Expect = 8e-29 Identities = 153/183 (83%), Positives = 153/183 (83%) Query: 115 cccaaaagttccaccagagaagtactaaacctgataaacaccttcagcaaagtggctggg 174 ||||||||||||||||||||| |||||||||||||| | ||| ||||||| |||||| Sbjct: 2407 cccaaaagttccaccagagaacacctaaacctgataaagaactttagcaaagcagctggg 2348 Query: 175 tataaaattaactcaaataagtcagtagccttcctctacacaaaagagaaataagcggag 234 |||||||||||| |||| || |||| ||||||||||||| |||| || || || || ||| Sbjct: 2347 tataaaattaacccaaacaaatcagaagccttcctctactcaaaggataagtaggctgag 2288 Query: 235 aaagaaattgggaaaaagacgcaattcataatagtcccaaattatacaaaatacctcggt 294 || |||||| || ||| ||| | ||||| ||||||| |||| ||| ||||||||| ||| Sbjct: 2287 aaggaaattagggaaatgacaccattcacaatagtcacaaacaatataaaataccttggt 2228 Query: 295 gtg 297 ||| Sbjct: 2227 gtg 2225 Score = 77.8 bits (39), Expect = 2e-14 Identities = 45/47 (95%), Positives = 45/47 (95%) Query: 18 ttggaaaggaagaagtcaaatatcactatttgcagatgatatgatag 64 |||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 2468 ttggaaaggaagaagtgaaatatcactatttgcagatgatataatag 2422 >gnl|UG|Rn.27775 UI-R-BT0-pr-f-08-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-pr-f-08-0-UI /clone_end=3' /gb=AI145025 /gi=3666824 /len=526 Length = 526 Score = 36.2 bits (18), Expect = 0.060 Identities = 24/26 (92%), Positives = 24/26 (92%) Query: 39 atcactatttgcagatgatatgatag 64 ||||| ||||||| |||||||||||| Sbjct: 94 atcaccatttgcaaatgatatgatag 119 >gnl|UG|Rn.24113 EST219917 Rattus norvegicus cDNA, 3' end /clone=ROVBQ24 /clone_end=3' /gb=AI176334 /gi=3726972 /len=468 Length = 468 Score = 32.2 bits (16), Expect = 0.94 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 260 tcataatagtcccaaa 275 |||||||||||||||| Sbjct: 259 tcataatagtcccaaa 244 >gnl|UG|Rn.2862 Rattus norvegicus calpain-like protease (Capa6) mRNA, complete cds /cds=(159,2084) /gb=AF067793 /gi=3201904 /len=3498 Length = 3498 Score = 32.2 bits (16), Expect = 0.94 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 19 tggaaaggaagaagtc 34 |||||||||||||||| Sbjct: 1794 tggaaaggaagaagtc 1809 >gnl|UG|Rn.6150 Rat DNA for lanosterol 14-demethylase /cds=(126,1637) /gb=AB004096 /gi=2190005 /len=3083 Length = 3083 Score = 32.2 bits (16), Expect = 0.94 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 227 aagcggagaaagaaat 242 |||||||||||||||| Sbjct: 690 aagcggagaaagaaat 705 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2581 Number of Sequences: 23003 Number of extensions: 2581 Number of successful extensions: 677 Number of sequences better than 10: 22 length of query: 318 length of database: 15818664 effective HSP length: 16 effective length of query: 302 effective length of database: 15450616 effective search space: 4666086032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)