BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 00440 (438 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.11027 Rat mRNA for cytoplasmic dynein heavy chain, co... 70 6e-12 gnl|UG|Rn.17594 EST205044 Rattus norvegicus cDNA, 3' end /clone... 36 0.084 gnl|UG|Rn.13869 EST203426 Rattus norvegicus cDNA, 3' end /clone... 34 0.33 gnl|UG|Rn.32074 Rat cardiac specific sodium channel alpha-subun... 32 1.3 >gnl|UG|Rn.11027 Rat mRNA for cytoplasmic dynein heavy chain, complete cds /cds=(1340,15274) /gb=D13896 /gi=402527 /len=15500 Length = 15500 Score = 69.9 bits (35), Expect = 6e-12 Identities = 74/86 (86%), Positives = 74/86 (86%), Gaps = 2/86 (2%) Query: 260 tgacagtagttcaagg-gtnggcattcangacaattggtggtt-gtaggttagttntgag 317 ||||||||| |||||| || |||||||| ||||| |||||| | ||||| ||||| |||| Sbjct: 263 tgacagtagctcaaggtgtcggcattcatgacaactggtgggtcgtaggctagttctgag 204 Query: 318 ttatntgntggacagtggaaatacct 343 ||| || |||||||||||||||||| Sbjct: 203 ctatctgctggacagtggaaatacct 178 >gnl|UG|Rn.17594 EST205044 Rattus norvegicus cDNA, 3' end /clone=RMUAO83 /clone_end=3' /gb=AI010593 /gi=3224425 /len=442 Length = 442 Score = 36.2 bits (18), Expect = 0.084 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 102 tatacaattgaaattttg 119 |||||||||||||||||| Sbjct: 385 tatacaattgaaattttg 402 >gnl|UG|Rn.13869 EST203426 Rattus norvegicus cDNA, 3' end /clone=REMBG48 /clone_end=3' /gb=AI008975 /gi=3222807 /len=538 Length = 538 Score = 34.2 bits (17), Expect = 0.33 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 412 ccagcattgattatatgtttt 432 |||||| |||||||||||||| Sbjct: 87 ccagcagtgattatatgtttt 67 >gnl|UG|Rn.32074 Rat cardiac specific sodium channel alpha-subunit mRNA, complete cds /cds=(197,6256) /gb=M27902 /gi=206857 /len=7545 Length = 7545 Score = 32.2 bits (16), Expect = 1.3 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 240 cggttacaccagcttc 255 |||||||||||||||| Sbjct: 1250 cggttacaccagcttc 1265 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3550 Number of Sequences: 23003 Number of extensions: 3550 Number of successful extensions: 1100 Number of sequences better than 10: 8 length of query: 438 length of database: 15818664 effective HSP length: 17 effective length of query: 421 effective length of database: 15427613 effective search space: 6495025073 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)