BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 00264 (334 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.12103 UI-R-E0-dk-e-02-0-UI.s1 Rattus norvegicus cDNA,... 182 4e-46 gnl|UG|Rn.26579 UI-R-Y0-lz-c-06-0-UI.s1 Rattus norvegicus cDNA,... 44 3e-04 gnl|UG|Rn.3802 EST189111 Rattus norvegicus cDNA, 3' end /clone=... 32 0.99 gnl|UG|Rn.8069 EST212954 Rattus norvegicus cDNA, 3' end /clone=... 32 0.99 gnl|UG|Rn.3873 EST214477 Rattus norvegicus cDNA, 3' end /clone=... 30 3.9 >gnl|UG|Rn.12103 UI-R-E0-dk-e-02-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-dk-e-02-0-UI /clone_end=3' /gb=AA900802 /gi=3036156 /len=476 Length = 476 Score = 182 bits (92), Expect = 4e-46 Identities = 100/103 (97%), Positives = 100/103 (97%) Query: 187 gatcctcaggcaggtcaatgtccaattttctgaagaacctccagantgatttccagaatg 246 ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 69 gatcctcaggcagttcaatgtccaattttctgaggaacctccagactgatttccagaatg 128 Query: 247 gttgtaccagtctgcaatcccaccaacaatggaggagtgttcc 289 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 gttgtaccagtctgcaatcccaccaacaatggaggagtgttcc 171 >gnl|UG|Rn.26579 UI-R-Y0-lz-c-06-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-Y0-lz-c-06-0-UI /clone_end=3' /gb=AI111446 /gi=3511488 /len=342 Length = 342 Score = 44.1 bits (22), Expect = 3e-04 Identities = 31/34 (91%), Positives = 31/34 (91%) Query: 266 ccaccaacaatggaggagtgttcctctttctcca 299 |||||||||||| |||| |||||||||| ||||| Sbjct: 264 ccaccaacaatgaaggaatgttcctcttactcca 297 >gnl|UG|Rn.3802 EST189111 Rattus norvegicus cDNA, 3' end /clone=RHEAD18 /clone_end=3' /gb=AA799614 /gi=2862569 /len=556 Length = 556 Score = 32.2 bits (16), Expect = 0.99 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 282 agtgttcctctttctc 297 |||||||||||||||| Sbjct: 494 agtgttcctctttctc 509 >gnl|UG|Rn.8069 EST212954 Rattus norvegicus cDNA, 3' end /clone=REMCE88 /clone_end=3' /gb=AI103665 /gi=3708191 /len=521 Length = 521 Score = 32.2 bits (16), Expect = 0.99 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 2 gaacacgctctacctt 17 |||||||||||||||| Sbjct: 497 gaacacgctctacctt 512 >gnl|UG|Rn.3873 EST214477 Rattus norvegicus cDNA, 3' end /clone=RKIBG71 /clone_end=3' /gb=AI105188 /gi=3709333 /len=496 Length = 496 Score = 30.2 bits (15), Expect = 3.9 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 264 tcccaccaacaatgg 278 ||||||||||||||| Sbjct: 305 tcccaccaacaatgg 291 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2531 Number of Sequences: 23003 Number of extensions: 2531 Number of successful extensions: 640 Number of sequences better than 10: 13 length of query: 334 length of database: 15818664 effective HSP length: 16 effective length of query: 318 effective length of database: 15450616 effective search space: 4913295888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)