BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DXRat36 (574 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone... 147 4e-35 gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=15... 147 4e-35 gnl|UG|Rn.32138 UI-R-E0-bx-h-01-0-UI.s1 Rattus norvegicus cDNA,... 46 1e-04 gnl|UG|Rn.9836 Rat O-6-alkylguanine-DNA-alkyltransferase mRNA /... 42 0.002 gnl|UG|Rn.15656 EST195852 Rattus norvegicus cDNA, 3' end /clone... 40 0.007 >gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone=RBRAS22 /clone_end=3' /gb=AI007614 /gi=3221446 /len=522 Length = 522 Score = 147 bits (74), Expect = 4e-35 Identities = 88/90 (97%), Positives = 88/90 (97%), Gaps = 2/90 (2%) Query: 386 aattcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctca-aattcca 444 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 434 aattcgtaatcatg-tcatagctgtttcctgtgtgaaattgttatccgctcacaattcca 492 Query: 445 cacaacatacgagccggaagcataaagtgt 474 |||||||||||||||||||||||||||||| Sbjct: 493 cacaacatacgagccggaagcataaagtgt 522 >gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=1503971 /len=441 Length = 441 Score = 147 bits (74), Expect = 4e-35 Identities = 84/86 (97%), Positives = 84/86 (97%), Gaps = 1/86 (1%) Query: 390 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctca-aattccacaca 448 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 329 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 388 Query: 449 acatacgagccggaagcataaagtgt 474 |||||||| ||||||||||||||||| Sbjct: 389 acatacgaaccggaagcataaagtgt 414 >gnl|UG|Rn.32138 UI-R-E0-bx-h-01-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-bx-h-01-0-UI /clone_end=3' /gb=AA859714 /gi=2949234 /len=504 Length = 504 Score = 44.1 bits (22), Expect = 5e-04 Identities = 22/22 (100%), Positives = 22/22 (100%) Query: 249 ttaattaattaattaattaatt 270 |||||||||||||||||||||| Sbjct: 76 ttaattaattaattaattaatt 97 Score = 40.1 bits (20), Expect = 0.007 Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 249 ttaattaattaattaattaa 268 |||||||||||||||||||| Sbjct: 80 ttaattaattaattaattaa 99 Score = 40.1 bits (20), Expect = 0.007 Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 251 aattaattaattaattaatt 270 |||||||||||||||||||| Sbjct: 74 aattaattaattaattaatt 93 Score = 46.1 bits (23), Expect = 1e-04 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 249 ttaattaattaattaattaattg 271 ||||||||||||||||||||||| Sbjct: 95 ttaattaattaattaattaattg 73 Score = 44.1 bits (22), Expect = 5e-04 Identities = 22/22 (100%), Positives = 22/22 (100%) Query: 249 ttaattaattaattaattaatt 270 |||||||||||||||||||||| Sbjct: 99 ttaattaattaattaattaatt 78 >gnl|UG|Rn.9836 Rat O-6-alkylguanine-DNA-alkyltransferase mRNA /cds=(99,728) /gb=X54862 /gi=311908 /len=837 Length = 837 Score = 42.1 bits (21), Expect = 0.002 Identities = 21/21 (100%), Positives = 21/21 (100%) Query: 385 gaattcgtaatcatggtcata 405 ||||||||||||||||||||| Sbjct: 817 gaattcgtaatcatggtcata 837 >gnl|UG|Rn.15656 EST195852 Rattus norvegicus cDNA, 3' end /clone=RKIAL20 /clone_end=3' /gb=AA892049 /gi=3018928 /len=531 Length = 531 Score = 40.1 bits (20), Expect = 0.007 Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 351 tggatctcctggaactagag 370 |||||||||||||||||||| Sbjct: 430 tggatctcctggaactagag 411 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5306 Number of Sequences: 23003 Number of extensions: 5306 Number of successful extensions: 538 Number of sequences better than 10: 29 length of query: 574 length of database: 15818664 effective HSP length: 17 effective length of query: 557 effective length of database: 15427613 effective search space: 8593180441 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)