BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D7Rat76 (624 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.14538 Rattus norvegicus heme oxygenase-3 (HO-3) mRNA,... 135 2e-31 gnl|UG|Rn.18495 UI-R-C0-ja-e-09-0-UI.s1 Rattus norvegicus cDNA,... 101 2e-21 gnl|UG|Rn.16429 UI-R-A0-ah-b-04-0-UI.s1 Rattus norvegicus cDNA,... 44 5e-04 gnl|UG|Rn.12692 UI-R-C0-hr-g-02-0-UI.s1 Rattus norvegicus cDNA,... 36 0.12 >gnl|UG|Rn.14538 Rattus norvegicus heme oxygenase-3 (HO-3) mRNA, complete cds /cds=(1061,1933) /gb=AF058787 /gi=3063688 /len=2225 Length = 2225 Score = 135 bits (68), Expect = 2e-31 Identities = 108/119 (90%), Positives = 108/119 (90%), Gaps = 2/119 (1%) Query: 421 cctgccagagacaccgccggaccctgaaggaaacagaccagataaacagttctctncacc 480 |||||| |||||||| ||||| |||||| |||||||||| ||||||||||||||| |||| Sbjct: 763 cctgcctgagacaccaccggaacctgaaagaaacagaccggataaacagttctctgcacc 704 Query: 481 cacatcccggtgggagggagagctaaaccttcagagagggagacaag-ctgggaaacca 538 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 703 caaatccc-gtgggagggagagctgaaccttcagagaggcagacaagcctgggaaacca 646 >gnl|UG|Rn.18495 UI-R-C0-ja-e-09-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-ja-e-09-0-UI /clone_end=3' /gb=AI029941 /gi=3247767 /len=337 Length = 337 Score = 101 bits (51), Expect = 2e-21 Identities = 85/94 (90%), Positives = 85/94 (90%), Gaps = 2/94 (2%) Query: 446 gaaggaaacagaccagataaacagttctctncacccacatcccggtgggagggagagcta 505 |||||||||||||| ||||||||| ||||| |||||| ||||| ||||||||||||||| Sbjct: 334 gaaggaaacagaccggataaacagatctctgcacccaaatccc-gtgggagggagagctg 276 Query: 506 aaccttcagagagggagacaag-ctgggaaacca 538 |||||||||||| | ||||||| ||||||||||| Sbjct: 275 aaccttcagagacgcagacaagcctgggaaacca 242 >gnl|UG|Rn.16429 UI-R-A0-ah-b-04-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-A0-ah-b-04-0-UI /clone_end=3' /gb=AA817995 /gi=2887875 /len=491 Length = 491 Score = 44.1 bits (22), Expect = 5e-04 Identities = 22/22 (100%), Positives = 22/22 (100%) Query: 87 agaaagggtttattttggctca 108 |||||||||||||||||||||| Sbjct: 23 agaaagggtttattttggctca 44 >gnl|UG|Rn.12692 UI-R-C0-hr-g-02-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-hr-g-02-0-UI /clone_end=3' /gb=AA997426 /gi=3188209 /len=432 Length = 432 Score = 36.2 bits (18), Expect = 0.12 Identities = 27/30 (90%), Positives = 27/30 (90%) Query: 95 tttattttggctcatggtttgcaggtacag 124 |||||||||||| | |||||| |||||||| Sbjct: 31 tttattttggctaacggtttgaaggtacag 60 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4273 Number of Sequences: 23003 Number of extensions: 4273 Number of successful extensions: 372 Number of sequences better than 10: 16 length of query: 624 length of database: 15818664 effective HSP length: 17 effective length of query: 607 effective length of database: 15427613 effective search space: 9364561091 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)