BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D7Rat40 (517 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.14525 Rattus norvegicus synapsin IIIa mRNA, complete ... 289 4e-78 gnl|UG|Rn.506 Rat synapsin 2a mRNA, complete cds /cds=(130,1890... 70 7e-12 gnl|UG|Rn.9961 Rat transferrin receptor mRNA, 3' end /cds=(0,18... 66 1e-10 gnl|UG|Rn.21595 UI-R-C0-jc-e-06-0-UI.s1 Rattus norvegicus cDNA,... 38 0.025 gnl|UG|Rn.11096 Rattus norvegicus cell cycle progression relate... 38 0.025 >gnl|UG|Rn.14525 Rattus norvegicus synapsin IIIa mRNA, complete cds /cds=(166,1905) /gb=AF056704 /gi=3170560 /len=2270 Length = 2270 Score = 289 bits (146), Expect = 4e-78 Identities = 146/146 (100%), Positives = 146/146 (100%) Query: 88 agatcaaagtagaaaaccagcacgactaccaggacatcaccagcgtggtggccatggcca 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 936 agatcaaagtagaaaaccagcacgactaccaggacatcaccagcgtggtggccatggcca 995 Query: 148 aaacctatgccaccacggaggcctttattgactccaagtatgacatccgcatacagaaga 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 996 aaacctatgccaccacggaggcctttattgactccaagtatgacatccgcatacagaaga 1055 Query: 208 tcggatccaactacaaggcatacatg 233 |||||||||||||||||||||||||| Sbjct: 1056 tcggatccaactacaaggcatacatg 1081 >gnl|UG|Rn.506 Rat synapsin 2a mRNA, complete cds /cds=(130,1890) /gb=M27925 /gi=206833 /len=2648 Length = 2648 Score = 69.9 bits (35), Expect = 7e-12 Identities = 116/143 (81%), Positives = 116/143 (81%) Query: 91 tcaaagtagaaaaccagcacgactaccaggacatcaccagcgtggtggccatggccaaaa 150 ||||||| ||||| || |||||| ||||||||| |||| ||||||||| | || ||| Sbjct: 972 tcaaagtggaaaatcactacgacttccaggacattgccagtgtggtggccctcacccaaa 1031 Query: 151 cctatgccaccacggaggcctttattgactccaagtatgacatccgcatacagaagatcg 210 |||||||||| | || |||| |||||| |||||||||||||||| | |||||||| | Sbjct: 1032 cctatgccacagcagaacccttcattgacgccaagtatgacatccgggttcagaagattg 1091 Query: 211 gatccaactacaaggcatacatg 233 | |||||||||||| |||||| Sbjct: 1092 gcaacaactacaaggcttacatg 1114 >gnl|UG|Rn.9961 Rat transferrin receptor mRNA, 3' end /cds=(0,1869) /gb=M58040 /gi=207463 /len=3413 Length = 3413 Score = 61.9 bits (31), Expect = 2e-09 Identities = 31/31 (100%), Positives = 31/31 (100%) Query: 7 catgcctgcaggtcgactctagaggatcccc 37 ||||||||||||||||||||||||||||||| Sbjct: 2712 catgcctgcaggtcgactctagaggatcccc 2742 Score = 65.9 bits (33), Expect = 1e-10 Identities = 36/37 (97%), Positives = 36/37 (97%) Query: 1 agcttccatgcctgcaggtcgactctagaggatcccc 37 ||||| ||||||||||||||||||||||||||||||| Sbjct: 2679 agcttgcatgcctgcaggtcgactctagaggatcccc 2643 >gnl|UG|Rn.21595 UI-R-C0-jc-e-06-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-jc-e-06-0-UI /clone_end=3' /gb=AI030494 /gi=3248320 /len=302 Length = 302 Score = 38.2 bits (19), Expect = 0.025 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 48 ctagatggacagcagcact 66 ||||||||||||||||||| Sbjct: 263 ctagatggacagcagcact 245 >gnl|UG|Rn.11096 Rattus norvegicus cell cycle progression related D123 mRNA, complete cds /cds=(53,1063) /gb=U34843 /gi=1236113 /len=1683 Length = 1683 Score = 38.2 bits (19), Expect = 0.025 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 1 agcttccatgcctgcaggtcgac 23 ||||| ||||||||||||||||| Sbjct: 1682 agcttgcatgcctgcaggtcgac 1660 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4611 Number of Sequences: 23003 Number of extensions: 4611 Number of successful extensions: 340 Number of sequences better than 10: 13 length of query: 517 length of database: 15818664 effective HSP length: 17 effective length of query: 500 effective length of database: 15427613 effective search space: 7713806500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)