BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D5Rat78 (609 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone... 100 9e-21 gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=15... 96 1e-19 gnl|UG|Rn.5419 Rattus norvegicus mRNA for G protein-coupled rec... 38 0.030 gnl|UG|Rn.1383 R.norvegicus phosphoglycerate mutase B isozyme (... 36 0.12 gnl|UG|Rn.16008 UI-R-C1-ki-a-12-0-UI.s1 Rattus norvegicus cDNA,... 32 1.8 >gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone=RBRAS22 /clone_end=3' /gb=AI007614 /gi=3221446 /len=522 Length = 522 Score = 99.6 bits (50), Expect = 9e-21 Identities = 61/66 (92%), Positives = 61/66 (92%) Query: 364 tttccngtgtgnnattgttatccgcncacaattccacacaacatacgagccggtagcata 423 ||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct: 457 tttcctgtgtgaaattgttatccgctcacaattccacacaacatacgagccggaagcata 516 Query: 424 aagtgt 429 |||||| Sbjct: 517 aagtgt 522 >gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=1503971 /len=441 Length = 441 Score = 95.6 bits (48), Expect = 1e-19 Identities = 73/82 (89%), Positives = 73/82 (89%), Gaps = 2/82 (2%) Query: 364 tttccngtgtgnnattgttatccgcncacaattccacacaacatacgagccggtagcata 423 ||||| ||||| |||||||||||| |||||||||||||||||||||| |||| |||||| Sbjct: 349 tttcctgtgtgaaattgttatccgctcacaattccacacaacatacgaaccggaagcata 408 Query: 424 aagtgt--nagcctggggtgcc 443 |||||| ||||||||||||| Sbjct: 409 aagtgttaaagcctggggtgcc 430 >gnl|UG|Rn.5419 Rattus norvegicus mRNA for G protein-coupled receptor kinase GRK4 /cds=(188,1915) /gb=X97568 /gi=1673502 /len=1997 Length = 1997 Score = 38.2 bits (19), Expect = 0.030 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 163 gaggaaatggaaagaagag 181 ||||||||||||||||||| Sbjct: 1371 gaggaaatggaaagaagag 1389 >gnl|UG|Rn.1383 R.norvegicus phosphoglycerate mutase B isozyme (PGAM) mRNA, complete cds /cds=(95,859) /gb=M76591 /gi=206100 /len=1754 Length = 1754 Score = 36.2 bits (18), Expect = 0.12 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 50 aagggatccaaaacacag 67 |||||||||||||||||| Sbjct: 1586 aagggatccaaaacacag 1569 >gnl|UG|Rn.16008 UI-R-C1-ki-a-12-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C1-ki-a-12-0-UI /clone_end=3' /gb=AI044719 /gi=3291580 /len=479 Length = 479 Score = 32.2 bits (16), Expect = 1.8 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 156 ttataatgaggaaatg 171 |||||||||||||||| Sbjct: 78 ttataatgaggaaatg 63 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2652 Number of Sequences: 23003 Number of extensions: 2652 Number of successful extensions: 202 Number of sequences better than 10: 6 length of query: 609 length of database: 15818664 effective HSP length: 17 effective length of query: 592 effective length of database: 15427613 effective search space: 9133146896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)